ICEberg
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ICE family: ICE6013
ICE6013 was characterized by Smyth et al. ICEs in ICE6013 family are defined by the following structure based on the figure from Smyth et al.


#IDICE nameStrainReplicon
168 experimental ICE6013Staphylococcus aureus HDG2-
2153 in_silico ICESauTW20-1Staphylococcus aureus subsp. aureus TW20
3154 in_silico ICESauT0131-1Staphylococcus aureus subsp. aureus T0131
4155 in_silico ICESauJKD6008-1Staphylococcus aureus subsp. aureus str. JKD6008
5351 in_silico ICESauTCH1516-1Staphylococcus aureus subsp. aureus USA300_TCH1516NC_010079
6352 in_silico ICESauFPR3757-1Staphylococcus aureus subsp. aureus USA300_FPR3757NC_007793
7353 in_silico ICESauED98-1Staphylococcus aureus subsp. aureus ED98NC_013450
8354 in_silico ICESa1Staphylococcus aureus subsp. aureus ST398AM990992
9355 in_silico ICESa2Staphylococcus aureus subsp. aureus ST398AM990992
10356 in_silico ICESauST398-4Staphylococcus aureus subsp. aureus ST398AM990992
11357 in_silico ICESauMRSA252-1Staphylococcus aureus subsp. aureus MRSA252NC_002952
12358 experimental Tn6012Staphylococcus aureus JCSC6826-
13359 in_silico ICESauCOL-1Staphylococcus aureus subsp. aureus COLNC_002951
experimental Data derived from experimental literature
in_silico Putative ICEs predicted by bioinformatic methods
ElementNo. of sequencesDownloadAlignment
Proteins213FastaMultiple protein sequence alignment by MUSCLE online
ICEs13Fasta Nucleotide sequence comparison by webACT
(1) Schijffelen MJ et al. (2010). Whole genome analysis of a livestock-associated methicillin-resistant Staphylococcus aureus ST398 isolate from a case of human endocarditis. BMC Genomics. 11:376. [PudMed:20546576]
(2) Smyth DS et al. (2009). Integrative and sequence characteristics of a novel genetic element, ICE6013, in Staphylococcus aureus. J Bacteriol. 191(19):5964-75. [PudMed:19648240] experimental
(3) Han X et al. (2009). Identification of a novel variant of staphylococcal cassette chromosome mec, type II.5, and Its truncated form by insertion of putative conjugative transposon Tn6012. Antimicrob Agents Chemother. 53(6):2616-9. [PudMed:19364875] in_silico
 
experimental experimental literature
in_silico in silico analysis literature