ICEberg
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Organism: Pseudomonas aeruginosa UCBPP-PA14
#IDICE nameICE familyReplicon
1175 experimental PAPI-1PAPI-1NC_008463
2332 in_silico ICE(Tn4371)6069Tn4371NC_008463
3384 in_silico ICEPaePA14-1UnclassifiedNC_008463
experimental Data derived from experimental literature
in_silico Putative ICEs predicted by bioinformatic methods
 

ElementNo. of sequencesDownloadAlignment
ICEs3Fasta Nucleotide sequence comparison by webACT
Proteins178FastaProtein
(1) Seth-Smith HM; Fookes MC; Okoro CK; Baker S; Harris SR; Scott P; Pickard D; Quail MA; Churcher C; Sanders M; Harmse J; Dougan G; Parkhill J; Thomson NR (2012). Structure, diversity, and mobility of the Salmonella pathogenicity island 7 family of integrative and conjugative elements within Enterobacteriaceae. J Bacteriol. 194(6):1494-504. [PudMed:22247511] in_silico
(2) Carter MQ; Chen J; Lory S (2010). The Pseudomonas aeruginosa pathogenicity island PAPI-1 is transferred via a novel type IV pilus. J Bacteriol. 192(13):3249-58. [PudMed:20363934] experimental
(3) Harrison EM; Carter ME; Luck S; Ou HY; He X; Deng Z; O'Callaghan C; Kadioglu A; Rajakumar K (2010). Pathogenicity islands PAPI-1 and PAPI-2 contribute individually and synergistically to the virulence of Pseudomonas aeruginosa strain PA14. Infect Immun. 78(4):1437-46. [PudMed:20123716] experimental
(4) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 9:242. [PudMed:19941653] experimental in_silico
(5) Mathee K; Narasimhan G; Valdes C; Qiu X; Matewish JM; Koehrsen M; Rokas A; Yandava CN; Engels R; Zeng E; Olavarietta R; Doud M; Smith RS; Montgomery P; White JR; Godfrey PA; Kodira C; Birren B; Galagan JE; Lory S (2008). Dynamics of Pseudomonas aeruginosa genome evolution. Proc Natl Acad Sci U S A. 105(8):3100-5. [PudMed:18287045]
(6) He J; Baldini RL; Deziel E; Saucier M; Zhang Q; Liberati NT; Lee D; Urbach J; Goodman HM; Rahme LG (2004). The broad host range pathogen Pseudomonas aeruginosa strain PA14 carries two pathogenicity islands harboring plant and animal virulence genes. Proc Natl Acad Sci U S A. 101(8):2530-5. [PudMed:14983043] experimental
 
experimental experimental literature
in_silico in silico analysis literature