ICEberg
ICEberg ID102
NameTn5386
FamilyUnclassified
OrganismEnterococcus faecium D344R
Size (bp)29172
GC content [Genome] (%)40
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceDQ321786 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates67..29238
Link to view genome context of this ICE in the genome browser
experimental This is a ICE derived from experimental literature.
Complete gene list of Tn5386 form DQ321786
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1-281..3340 [+], 306083940969  [UniProt] hypothetical protein
2-3574..3900 [+], 32783940970  [UniProt] hypothetical protein
3-3915..4298 [+], 38483940971  [UniProt] hypothetical protein
4-4501..5112 [+], 61283940972  [UniProt] hypothetical protein
5-5180..6571 [+], 139283940973  [UniProt] hypothetical protein
6-6568..6972 [+], 40583940974  [UniProt] hypothetical protein
7-7301..8422 [+], 112283940975  [UniProt] hypothetical protein
8-8429..8572 [+], 14483940976  [UniProt] hypothetical protein
9-8569..8790 [+], 22283940977  [UniProt] hypothetical protein
10-8875..9066 [+], 19283940978  [UniProt] hypothetical protein
11-9188..9400 [+], 21383940979  [UniProt] hypothetical protein
12-9397..9909 [+], 51383940980  [UniProt] hypothetical protein
13-9909..10415 [+], 50783940981  [UniProt] hypothetical protein
14-10579..10977 [+], 39983940982  [UniProt] hypothetical protein
15-10955..16085 [+], 513183940983  [UniProt] hypothetical protein
16-13202..15028 [+], 182783940984  [UniProt] hypothetical protein
17-16085..18295 [+], 221183940985  [UniProt] hypothetical protein
18-18292..19299 [+], 100883940986  [UniProt] hypothetical proteinVF
19-19317..20222 [+], 90683940987  [UniProt] hypothetical protein
20-20377..21081 [+], 70583940988  [UniProt] hypothetical protein
21-21074..21832 [+], 75983940989  [UniProt] hypothetical protein
22-21834..22586 [+], 75383940990  [UniProt] hypothetical protein
23-22599..23267 [+], 66983940991  [UniProt] hypothetical protein
24-23249..24619 [+], 137183940992  [UniProt] hypothetical protein
25-24735..25046 [+], 31283940993  [UniProt] hypothetical proteinVF
26-25086..25454 [-], 36983940994  [UniProt] hypothetical protein
27-25611..25835 [+], 22583940995  [UniProt] hypothetical protein
28-25854..26219 [+], 36683940996  [UniProt] hypothetical protein
29-26652..27080 [+], 42983940997  [UniProt] hypothetical protein
30-27067..27315 [+], 24983940998  [UniProt] hypothetical protein
31XisTn538627721..27927 [+], 20783940968  [UniProt] excisionase
32IntTn538628008..29207 [+], 120083940967  [UniProt] integrase
 
integrase Gene may contribute to site-specific recombination

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins32Fasta
(1) Rice LB; Carias LL; Hutton-Thomas R; Rudin S (2007). Interaction of related Tn916-like transposons: analysis of excision events promoted by Tn916 and Tn5386 integrases. J Bacteriol. 189(10):3909-17. [PudMed:17322310] experimental
(2) Rice LB; Carias LL; Marshall S; Rudin SD; Hutton-Thomas R (2005). Tn5386, a novel Tn916-like mobile element in Enterococcus faecium D344R that interacts with Tn916 to yield a large genomic deletion. J Bacteriol. 187(19):6668-77. [PudMed:16166528] experimental
 
experimental experimental literature