ICEberg
ICEberg ID112
NameICEYe1
FamilyICEYe1
OrganismYersinia enterocolitica Y69
Size (bp)120523
GC content [Genome] (%)45.3
Insertion sitetRNA-Phe
Function-
Species that ICE can be transferred to-
Nucleotide SequenceFN298493 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates16910..137431
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of ICEYe1 form FN298493
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1Y69_020112248..13078 [+], 831327412676 putative integrase
2Y69_020013472..14704 [+], 1233327412677 putative helicase
3Y69_019915312..15620 [+], 309327412678 putative exported protein
4Y69_019815726..16688 [+], 963327412679 putative phage integrase
5Y69_019717037..17918 [+], 882327412680  [UniProt] conserved hypothetical protein
6dnaB17911..19278 [+], 1368327412681  [UniProt] DNA helicase
7Y69_019219278..20865 [+], 1588pseudogene conserved hypothetical protein (pseudogene)
8Y69_019120862..21431 [+], 570327412682  [UniProt] conserved hypothetical protein
9Y69_018921537..22739 [+], 1203327412683  [UniProt] conserved hypothetical protein
10Y69_018722908..23666 [+], 759327412684  [UniProt] conserved hypothetical protein
11Y69_018523957..24499 [+], 543327412685  [UniProt] conserved hypothetical protein
12Y69_0184a24642..24884 [+], 243327412686  [UniProt] conserved hypothetical protein
13Y69_018424868..25116 [+], 249327412687  [UniProt] conserved hypothetical protein
14Y69_018325228..25659 [+], 432327412688  [UniProt] conserved hypothetical protein
15Y69_018125854..26828 [+], 975327412689  [UniProt] putative Type IV pilus lipoprotein (PilL)VF
16Y69_018026830..27267 [+], 438327412690  [UniProt] putative Type IV pilus exported protein (PilM)VF
17Y69_017727279..28967 [+], 1689327412691  [UniProt] putative Type IV pilus lipoprotein (PilN)VF
18Y69_017628970..30277 [+], 1308327412692  [UniProt] putative Type IV pilus protein (PilO)VF
19Y69_017530264..30743 [+], 480327412693  [UniProt] putative Type IV pilus assembly protein (PilP)VF
20Y69_016930752..32305 [+], 1554327412694  [UniProt] putative Type IV pilus protein (PilQ)VF
21Y69_016832298..33407 [+], 1110327412695  [UniProt] putative Type IV pilus integral membrane protein (PilR)VF
22Y69_016733422..34009 [+], 588327412696  [UniProt] putative Type IV prepilin (PilS)VF
23Y69_016634006..34674 [+], 669327412697  [UniProt] putative prepilin peptidase (PilU)VF
24Y69_016434678..35955 [+], 1278327412698  [UniProt] putative prepilin (PilV)VF
25Y69_016336049..36981 [+], 933327412699  [UniProt] putative transposase
26Y69_016237857..38261 [+], 405327412700  [UniProt] conserved hypothetical protein
27Y69_016038576..38815 [+], 240pseudogene putative transposase (pseudogene)
28Y69_015939606..40166 [+], 561327412701  [UniProt] hypothetical protein
29Y69_015840236..40508 [+], 273pseudogene putative IS element protein (pseudogene)
30Y69_015640535..40929 [+], 395pseudogene putative transposase (pseudogene)
31Y69_015541405..41983 [+], 579327412702  [UniProt] hypothetical protein
32Y69_015342241..42879 [+], 639327412703  [UniProt] hypothetical protein
33Y69_0152a43473..43688 [+], 216pseudogene putative transposase (pseudogene)
34Y69_015244503..44835 [+], 333327412704  [UniProt] hypothetical protein
35Y69_015145038..45226 [+], 189327412705  [UniProt] hypothetical protein
36Y69_015045278..46096 [+], 819327412706  [UniProt] putative membrane protein
37Y69_014946241..46531 [+], 291327412707  [UniProt] putative antitoxin
38Y69_014746559..47353 [-], 795pseudogene putative transposase (pseudogene)
39Y69_014647404..47694 [-], 291327412708  [UniProt] putative transposase
40Y69_014547907..48239 [+], 333327412709  [UniProt] conserved hypothetical protein
41Y69_014348331..49149 [+], 819327412710  [UniProt] putative membrane protein
42Y69_014249128..49766 [+], 639327412711  [UniProt] putative exported lytic transglycosylase
43Y69_014149763..50284 [+], 522327412712  [UniProt] putative exported protein
44Y69_013850457..52577 [+], 2121327412713  [UniProt] conserved hypothetical protein
45Y69_013752577..53329 [+], 753327412714  [UniProt] putative inner membrane protein
46Y69_013653428..53543 [+], 116pseudogene putative insertion element protein (pseudogene)
47Y69_013554422..54898 [+], 477327412715  [UniProt] hypothetical protein
48Y69_013455544..55981 [+], 438327412716  [UniProt] hypothetical protein
49Y69_013356437..56745 [+], 309327412717  [UniProt] putative exported protein
50Y69_013156745..56990 [+], 246327412718  [UniProt] putative membrane protein
51Y69_013057006..57356 [+], 351327412719  [UniProt] putative membrane protein
52Y69_012857366..57740 [+], 375327412720  [UniProt] putative membrane protein
53Y69_012657737..58393 [+], 657327412721  [UniProt] putative membrane protein
54Y69_012458393..59274 [+], 882327412722  [UniProt] conserved hypothetical protein
55Y69_012159271..60740 [+], 1470327412723  [UniProt] putative exported protein
56Y69_012060753..61169 [+], 417327412724  [UniProt] putative lipoprotein
57Y69_011661169..63964 [+], 2796327412725  [UniProt] conserved hypothetical protein
58Y69_011464191..64739 [-], 549327412726  [UniProt] conserved hypothetical protein
59Y69_011265111..66349 [+], 1239327412727  [UniProt] putative tranposase
60Y69_011166809..67459 [+], 651327412728  [UniProt] conserved hypothetical protein
61Y69_011067456..68172 [+], 717327412729  [UniProt] conserved hypothetical protein
62Y69_010968172..68825 [+], 654327412730  [UniProt] hypothetical protein
63Y69_010769149..70591 [-], 1443327412731  [UniProt] putative transposase
64Y69_010671279..71683 [+], 405327412732  [UniProt] putative exported protein
65Y69_010571680..72642 [+], 963327412733  [UniProt] putative lipoprotein
66Y69_010272654..74045 [+], 1392327412734  [UniProt] putative exported protein
67Y69_010074045..74356 [+], 312327412735  [UniProt] putative outer membrane protein
68Y69_009874366..75886 [+], 1521327412736  [UniProt] putative membrane protein
69Y69_009775921..76208 [-], 288327412737  [UniProt] conserved hypothetical protein
70Y69_009577166..78053 [+], 888327412738  [UniProt] conserved hypothetical protein
71Y69_009478458..79459 [+], 1002327412739  [UniProt] conserved hypothetical protein
72Y69_009379456..79743 [+], 288327412740  [UniProt] conserved hypothetical proteinVF
73Y69_009179844..80746 [+], 903327412741  [UniProt] conserved hypothetical protein
74Y69_008980811..81416 [-], 606327412742  [UniProt] putative membrane protein
75Y69_008781613..82833 [+], 1221327412743  [UniProt] putative helicase
76Y69_008682874..83830 [+], 957327412744  [UniProt] putative phage integrase
77Y69_008584907..85356 [+], 450327412745  [UniProt] putative transposase
78Y69_008485254..85571 [+], 318pseudogene putative transposase (pseudogene)
79Y69_008385762..86241 [-], 480327412746  [UniProt] putative exported protein
80Y69_008186243..87172 [-], 930327412747  [UniProt] putative transcriptional regulator
81Y69_007887562..88101 [+], 540327412748  [UniProt] fimbria A protein
82Y69_007688428..90953 [+], 2526327412749  [UniProt] putative fimbrial usher proteinVF
83Y69_007491063..91827 [+], 765327412750  [UniProt] putative fimbrial chaperone proteinVF
84Y69_007291817..92152 [+], 336327412751  [UniProt] putative fimbrial membrane protein
85Y69_007092169..92666 [+], 498327412752  [UniProt] putative exported fimbrial protein
86Y69_006992793..93293 [+], 501327412753  [UniProt] putative exported fimbrial protein
87Y69_006893290..93796 [+], 507327412754  [UniProt] putative fimbrial membrane protein
88Y69_006493812..94351 [+], 540327412755  [UniProt] putative exported fimbrial protein
89Y69_006294344..95324 [+], 981327412756  [UniProt] putative reverse transcriptase
90Y69_006095327..96097 [+], 771327412757  [UniProt] hypothetical protein
91Y69_005897640..98023 [+], 384327412758  [UniProt] hypothetical protein
92Y69_0057a98115..98228 [-], 114pseudogene putative transposase (pseudogene)
93Y69_005798504..98827 [+], 324327412759  [UniProt] conserved hypothetical proteinTA
94Y69_0056b98814..99095 [+], 282327412760  [UniProt] putative DNA binding proteinTA
95Y69_0056a99449..99517 [-], 69pseudogene putative transposase (pseudogene)
96Y69_005699540..99716 [-], 177pseudogene putative transposase (pseudogene)
97Y69_0054100564..100791 [+], 228327412761  [UniProt] hypothetical protein
98Y69_0051101511..102224 [+], 714327412762  [UniProt] putative exported protein
99Y69_0050102519..102761 [+], 243327412763  [UniProt] hypothetical protein
100Y69_0049103140..103772 [+], 633327412764  [UniProt] putative transcriptional regulator, GerE family
101Y69_0048103988..104476 [+], 489327412765  [UniProt] conserved hypothetical protein
102Y69_0045104473..105954 [+], 1482327412766  [UniProt] conserved hypothetical proteinVF
103Y69_0044105982..106473 [+], 492327412767  [UniProt] hypothetical protein
104Y69_0043106586..107005 [+], 420327412768  [UniProt] conserved hypothetical protein
105Y69_0042107017..108819 [+], 1803327412769  [UniProt] conserved hypothetical protein
106Y69_0041108810..109757 [+], 948327412770  [UniProt] conserved hypothetical protein
107Y69_0040109762..111816 [+], 2055327412771  [UniProt] conserved hypothetical protein
108Y69_0038111824..112345 [+], 522327412772  [UniProt] hypothetical protein
109Y69_0037112345..112644 [+], 300327412773  [UniProt] putative PAAR protein
110Y69_0034112656..113699 [+], 1044327412774  [UniProt] ImpA-like protein
111Y69_0033113696..114346 [+], 651327412775  [UniProt] putative lipoprotein
112Y69_0032114346..115725 [+], 1380327412776  [UniProt] conserved hypothetical protein
113Y69_0031115725..116339 [+], 615327412777  [UniProt] conserved hypothetical protein
114Y69_0027116352..119888 [+], 3537327412778  [UniProt] putative outer membrane protein
115Y69_0022119928..122471 [+], 2544327412779  [UniProt] putative Clp ATPaseVF
116Y69_0021122597..123223 [+], 627327412780  [UniProt] hypothetical protein
117Y69_0020123370..123747 [+], 378327412781  [UniProt] hypothetical protein
118Y69_0019124025..124447 [-], 423327412782  [UniProt] hypothetical protein
119Y69_0018125397..125948 [-], 552327412783  [UniProt] hypothetical protein
120Y69_0017126391..126855 [-], 465327412784  [UniProt] hypothetical protein
121Y69_0016127355..127750 [+], 396327412785  [UniProt] putative exported protein
122Y69_0014127753..129063 [+], 1311327412786  [UniProt] putative peptidyl-prolyl cis-trans isomerase
123Y69_0013129311..130171 [+], 861327412787  [UniProt] putative hydrolase, alpha/beta fold family
124Y69_0012130518..131135 [+], 618327412788  [UniProt] putative transcriptional regulator-GerE/LuxR family
125Y69_0011131847..132431 [+], 585327412789  [UniProt] hypothetical protein
126Y69_0009132789..134402 [-], 1614327412790  [UniProt] hypothetical protein
127Y69_0007135055..136533 [-], 1479327412791  [UniProt] putative major facilitator superfamily (MFS) transporter
128speF138166..140328 [+], 2163327412792 ornithine decarboxylase
129Y69_0004140397..141146 [-], 750327412793 putative membrane protein
130mltC141317..142393 [-], 1077327412794 membrane-bound lytic murein transglycosylase c precursor
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins112Fasta
(1) Seth-Smith HM; Fookes MC; Okoro CK; Baker S; Harris SR; Scott P; Pickard D; Quail MA; Churcher C; Sanders M; Harmse J; Dougan G; Parkhill J; Thomson NR (2012). Structure, diversity, and mobility of the Salmonella pathogenicity island 7 family of integrative and conjugative elements within Enterobacteriaceae. J Bacteriol. 194(6):1494-504. [PudMed:22247511] in_silico
 
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU