ICEberg
ICEberg ID113
NameICESb1
FamilySPI-7
OrganismSalmonella bongori CEIM46082
Size (bp)109418
GC content [Genome] (%)51
Insertion sitetRNA-Phe
Function-
Species that ICE can be transferred to-
Nucleotide SequenceFN298494 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1785..111202
Link to view genome context of this ICE in the genome browser
experimental This is a ICE derived from experimental literature.
Complete gene list of ICESb1 form FN298494
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1Sb1_00011..546 [-], 546327412798 conserved hypothetical protein
2Sb1_00021316..1624 [-], 309pseudogene bacteriophage integrase (pseudogene)
3Sb1_00031919..2953 [+], 1035327412799  [UniProt] hypothetical protein
4dnaB2950..4314 [+], 1365327412800  [UniProt] dna helicase
5Sb1_00054307..6106 [+], 1800327412801  [UniProt] hypothetical protein
6Sb1_00066096..6323 [+], 228327412802  [UniProt] putative zinc finger protein
7Sb1_00076320..6580 [+], 261327412803  [UniProt] hypothetical protein
8Sb1_00086567..7289 [+], 723327412804  [UniProt] conserved hypothetical protein
9Sb1_00097374..7931 [+], 558327412805  [UniProt] conserved hypothetical protein
10Sb1_00107931..8179 [+], 249327412806  [UniProt] conserved hypothetical protein
11Sb1_00118176..9519 [+], 1344327412807  [UniProt] hypothetical protein
12Sb1_001210104..10883 [+], 780327412808  [UniProt] conserved hypothetical protein
13topB10994..12988 [+], 1995327412809  [UniProt] topoisomerase
14Sb1_001413609..14058 [+], 450327412810  [UniProt] conserved hypothetical protein
15Sb1_001514139..14357 [+], 219327412811  [UniProt] conserved hypothetical protein
16ssb14370..14906 [+], 537327412812  [UniProt] single strand binding proteinVF
17Sb1_001714972..15910 [+], 939327412813  [UniProt] putative transposase
18pilL16075..17319 [+], 1245327412814  [UniProt] putative exported proteinVF
19pilM17322..17759 [+], 438327412815  [UniProt] putative exported protein
20pilN17771..19453 [+], 1683327412816  [UniProt] putative pilus assembly proteinVF
21pilO19455..20741 [+], 1287327412817  [UniProt] putative pilus assembly protein
22pilP20722..21309 [+], 588327412818  [UniProt] putative pilus protein
23pilQ21319..23034 [+], 1716327412819  [UniProt] putative nucleotide binding proteinVF
24pilR23031..24116 [+], 1086327412820  [UniProt] putative membrane proteinVF
25pilS24116..24751 [+], 636327412821  [UniProt] prepilinVF
26pilT24761..25237 [+], 477327412822  [UniProt] putative membrane protein
27pilU25234..25896 [+], 663327412823  [UniProt] prepilin peptidase
28pilV25893..27320 [+], 1428327412824  [UniProt] prepilinVF
29rci28414..29565 [+], 1152327412825  [UniProt] shufflon-specific dna recombinase
30pilK29662..30129 [+], 468327412826  [UniProt] putative exported protein
31Sb1_003430343..31218 [+], 876327412827  [UniProt] conserved hypothetical protein
32traF31329..32525 [+], 1197327412828  [UniProt] putative exported proteinVF
33Sb1_003632588..33226 [+], 639327412829  [UniProt] hypothetical protein
34Sb1_0036a33258..34559 [+], 1302pseudogene conserved hypothetical protein (pseudogene)
35Sb1_003733539..34273 [-], 735327412830  [UniProt] putative membrane protein
36Sb1_003934516..35430 [+], 915327412831  [UniProt] putative membrane protein
37Sb1_004035449..36189 [+], 741327412832  [UniProt] putative membrane protein
38Sb1_004136168..36854 [+], 687327412833  [UniProt] putative exported protein
39Sb1_004236851..37390 [+], 540327412834  [UniProt] putative exported protein
40Sb1_004337400..37969 [+], 570327412835  [UniProt] putative type IV restriction endonuclease
41Sb1_004437989..40079 [+], 2091327412836  [UniProt] conserved hypothetical protein
42Sb1_004540076..40834 [+], 759327412837  [UniProt] putative membrane protein
43Sb1_004640998..41324 [+], 327327412838  [UniProt] putative exported protein
44Sb1_004741324..41563 [+], 240327412839  [UniProt] putative membrane protein
45Sb1_004841593..41955 [+], 363327412840  [UniProt] putative membrane protein
46Sb1_004941965..42339 [+], 375327412841  [UniProt] putative membrane protein
47Sb1_005042336..42989 [+], 654327412842  [UniProt] putative membrane protein
48Sb1_005142989..43888 [+], 900327412843  [UniProt] conserved hypothetical protein
49Sb1_005243878..45356 [+], 1479327412844  [UniProt] putative exported protein
50Sb1_005345343..45792 [+], 450327412845  [UniProt] hypothetical protein
51Sb1_005445789..48629 [+], 2841327412846  [UniProt] conserved hypothetical protein
52Sb1_005648784..49170 [+], 387327412847  [UniProt] conserved hypothetical protein
53Sb1_005749325..49717 [+], 393327412848  [UniProt] putative exported protein
54Sb1_005849714..50682 [+], 969327412849  [UniProt] putative exported protein
55Sb1_005950697..52127 [+], 1431327412850  [UniProt] putative exported protein
56Sb1_006052124..52456 [+], 333327412851  [UniProt] putative membrane protein
57Sb1_006152460..53971 [+], 1512327412852  [UniProt] putative membrane protein
58Sb1_006254014..54385 [-], 372327412853  [UniProt] putative membrane protein
59Sb1_006354609..54914 [-], 306327412854  [UniProt] hypothetical protein
60Sb1_006554991..55158 [+], 168327412855  [UniProt] putative membrane protein
61Sb1_006655255..56502 [+], 1248327412856  [UniProt] conserved hypothetical proteinVF
62Sb1_006756487..57128 [+], 642327412857  [UniProt] conserved hypothetical proteinVF
63Sb1_006857270..57881 [-], 612327412858  [UniProt] conserved hypothetical protein
64Sb1_006959195..60115 [+], 921327412859  [UniProt] conserved hypothetical protein
65Sb1_007060633..61142 [+], 510327412860  [UniProt] hypothetical protein
66Sb1_007161239..61619 [+], 381327412861  [UniProt] hypothetical protein
67Sb1_007362085..62669 [+], 585327412862  [UniProt] putative membrane protein
68Sb1_007462666..62962 [+], 297327412863  [UniProt] putative exported protein
69Sb1_007563040..63498 [+], 459327412864  [UniProt] putative membrane protein
70Sb1_007663587..65530 [+], 1944327412865  [UniProt] putative membrane proteinVF
71Sb1_007765600..66508 [+], 909327412866  [UniProt] conserved hypothetical protein
72Sb1_007866582..67481 [+], 900327412867  [UniProt] conserved hypothetical protein
73Sb1_007967558..67884 [+], 327327412868  [UniProt] hypothetical protein
74Sb1_0079a67984..68139 [-], 156pseudogene hypothetical protein (pseudogene)
75Sb1_008068592..70184 [+], 1593327412869  [UniProt] putative exported sulfatase family protein
76Sb1_008170234..71529 [+], 1296327412870  [UniProt] putative arylsulfatase-activating protein
77Sb1_008271526..72524 [+], 999327412871  [UniProt] ATPase domain protein
78Sb1_008372521..73429 [+], 909327412872  [UniProt] conserved hypothetical protein
79Sb1_008473430..73870 [+], 441327412873  [UniProt] putative membrane protein
80Sb1_008573863..74840 [+], 978327412874  [UniProt] putative Von Willebrand factor, type A
81Sb1_008674837..76360 [+], 1524327412875  [UniProt] putative membrane protein
82Sb1_008776357..77373 [+], 1017327412876  [UniProt] putative membrane protein
83Sb1_008877370..78365 [+], 996327412877  [UniProt] putative exported protein
84Sb1_008978640..88332 [+], 9693327412878  [UniProt] putative autotransporter
85Sb1_009088417..90054 [+], 1638327412879  [UniProt] putative mechanosensitive ion channel
86Sb1_009190051..91712 [+], 1662327412880  [UniProt] hypothetical protein
87Sb1_009291727..92881 [+], 1155327412881  [UniProt] putative outer membrane protein
88Sb1_009392984..93241 [-], 258pseudogene conserved hypothetical protein (pseudogene)
89Sb1_009593849..94205 [+], 357327412882  [UniProt] hypothetical protein
90Sb1_009794373..94549 [-], 177327412883  [UniProt] putative transcriptional regulator (partial)
91Sb1_009894568..95437 [-], 870327412884  [UniProt] putative membrane protein
92samB96277..96639 [-], 363pseudogene conserved hypothetical protein (pseudogene)
93Sb1_010296679..99607 [-], 2929pseudogene transposase remnant (pseudogene)
94Sb1_010397248..98757 [-], 1510pseudogene putative group II intron reverse transcriptase (pseudogene)
95samB99653..99754 [-], 102pseudogene UV protection protein (pseudogene)
96samA99754..100176 [-], 423pseudogene UV protection protein (pseudogene)
97Sb1_0108100482..100955 [-], 474327412885  [UniProt] conserved hypothetical protein
98Sb1_0109101013..101447 [-], 435327412886  [UniProt] conserved hypothetical protein
99qnr101801..102448 [+], 648327412887  [UniProt] putative quinolone resistance protein
100Sb1_0111103129..103506 [+], 378327412888  [UniProt] conserved hypothetical protein
101Sb1_0112103718..104260 [+], 543327412889  [UniProt] putative transcriptional regulator-TetR family
102Sb1_0113104257..105744 [+], 1488327412890  [UniProt] putative major facilitator family efflux pump
103Sb1_0114105928..106377 [+], 450327412891  [UniProt] putative acetyltransferase
104Sb1_0115106382..106645 [+], 264327412892  [UniProt] hypothetical protein
105Sb1_0116106763..108274 [+], 1512327412893  [UniProt] conserved hypothetical protein
106Sb1_0117108258..109847 [+], 1590327412894  [UniProt] putative helicase
107Sb1_0118110011..111024 [+], 1014327412895  [UniProt] probable phage integrase
108yqgA111384..112091 [-], 708327412896 putative membrane protein
109speC112517..114652 [+], 2136327412897 ornithine decarboxylase
110nupG114714..115970 [-], 1257327412898 nucleoside permease
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins97Fasta
(1) Seth-Smith HM; Fookes MC; Okoro CK; Baker S; Harris SR; Scott P; Pickard D; Quail MA; Churcher C; Sanders M; Harmse J; Dougan G; Parkhill J; Thomson NR (2012). Structure, diversity, and mobility of the Salmonella pathogenicity island 7 family of integrative and conjugative elements within Enterobacteriaceae. J Bacteriol. 194(6):1494-504. [PudMed:22247511] in_silico
 
in_silico in silico analysis literature