ICEberg
ICEberg
ICEberg ID114
NameICESb2
FamilySPI-7
OrganismSalmonella bongori 2022/77
Size (bp)101251
GC content [Genome] (%)50.1
Insertion sitetRNA-Phe
Function-
Species that ICE can be transferred to-
Nucleotide SequenceFN669609 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates564..84432
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of ICESb2 form FN669609
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1Sb2_000196..404 [-], 309pseudogene bacteriophage integrase (pseudogene)
2Sb2_0011698..1732 [+], 1035323669638  [UniProt] putative plasmid partitioning protein
3Sb2_00211729..3093 [+], 1365323669639  [UniProt] DNA helicase
4Sb2_00313086..4885 [+], 1800323669640  [UniProt] putative DNA binding protein
5Sb2_00414875..5102 [+], 228323669641  [UniProt] -
6Sb2_00515099..5359 [+], 261323669642  [UniProt] hypothetical protein
7Sb2_00615346..6068 [+], 723323669643  [UniProt] hypothetical protein
8Sb2_00716153..6710 [+], 558323669644  [UniProt] hypothetical protein
9Sb2_00816710..6958 [+], 249323669645  [UniProt] -
10Sb2_00916955..8298 [+], 1344323669646  [UniProt] hypothetical protein
11Sb2_01018714..9565 [+], 852323669647  [UniProt] hypothetical protein
12Sb2_01119604..11595 [+], 1992323669648  [UniProt] topoisomerase B
13Sb2_012112263..12712 [+], 450323669649  [UniProt] putative periplasmic protein
14Sb2_013112793..13011 [+], 219323669650  [UniProt] hypothetical protein
15Sb2_014113024..13560 [+], 537323669651  [UniProt] single strand binding proteinVF
16Sb2_015113626..14564 [+], 939323669652  [UniProt] conserved hypothetical protein
17Sb2_016114729..15988 [+], 1260323669653  [UniProt] putative exported proteinVF
18Sb2_017115991..16428 [+], 438323669654  [UniProt] putative exported protein
19Sb2_018116440..18122 [+], 1683323669655  [UniProt] pilus assembly proteinVF
20Sb2_019118124..19410 [+], 1287323669656  [UniProt] putative pilus assembly protein
21Sb2_020119391..19978 [+], 588323669657  [UniProt] pilus assembly protein
22Sb2_021119988..21703 [+], 1716323669658  [UniProt] nucleotide-binding proteinVF
23Sb2_022121700..22785 [+], 1086323669659  [UniProt] putative membrane proteinVF
24Sb2_023122785..23420 [+], 636323669660  [UniProt] prepilinVF
25Sb2_024123430..23906 [+], 477323669661  [UniProt] putative membrane protein
26Sb2_025123903..24565 [+], 663323669662  [UniProt] prepilin peptidase
27Sb2_026124562..25989 [+], 1428323669663  [UniProt] prepilinVF
28Sb2_027127218..27724 [+], 507323669664  [UniProt] putative acetyltransferase
29Sb2_028128832..29983 [+], 1152323669665  [UniProt] shufflon-specific DNA recombinase
30Sb2_029130080..30547 [+], 468323669666  [UniProt] putative exported protein
31Sb2_030130761..31636 [+], 876323669667  [UniProt] putative traE protein
32traF31747..32943 [+], 1197323669668  [UniProt] putative exported proteinVF
33Sb2_032133006..33644 [+], 639323669669  [UniProt] hypothetical protein
34Sb2_033133676..34938 [+], 1263pseudogene conserved hypothetical protein (pseudogene)
35Sb2_034133957..34682 [-], 726323669670  [UniProt] putative membrane protein
36Sb2_035134895..35809 [+], 915323669671  [UniProt] putative plasmid transfer protein
37Sb2_036135828..36568 [+], 741323669672  [UniProt] putative traG protein
38Sb2_037136547..37233 [+], 687323669673  [UniProt] putative traL protein
39Sb2_038137230..37769 [+], 540323669674  [UniProt] putative traW protein
40Sb2_039137779..38348 [+], 570323669675  [UniProt] putative membrane protein
41Sb2_040138368..40458 [+], 2091323669676  [UniProt] putative traD protein
42Sb2_041140455..41213 [+], 759323669677  [UniProt] putative maturase protein
43Sb2_042141377..41703 [+], 327323669678  [UniProt] putative effector protein
44Sb2_043141703..41942 [+], 240323669679  [UniProt] putative membrane protein
45Sb2_044141972..42334 [+], 363323669680  [UniProt] putative membrane protein
46Sb2_045142344..42718 [+], 375323669681  [UniProt] -
47Sb2_046142715..43368 [+], 654323669682  [UniProt] putative DnaA chromosomal replication protein
48Sb2_047143368..44267 [+], 900323669683  [UniProt] hypothetical protein
49Sb2_048144257..45735 [+], 1479323669684  [UniProt] putative traB protein
50Sb2_049145722..46171 [+], 450323669685  [UniProt] putative secreted peptidase
51Sb2_050146168..49008 [+], 2841323669686  [UniProt] hypothetical protein
52Sb2_051149163..49549 [+], 387323669687  [UniProt] hypothetical protein
53Sb2_052149704..50096 [+], 393323669688  [UniProt] putative ATP binding protein
54Sb2_053150093..51061 [+], 969323669689  [UniProt] putative traU protein
55Sb2_054151076..52506 [+], 1431323669690  [UniProt] putative ATP binding protein
56Sb2_055152503..52844 [+], 342323669691  [UniProt] putative membrane protein
57Sb2_056152848..54353 [+], 1506323669692  [UniProt] putative traG protein
58Sb2_057154389..54778 [-], 390323669693  [UniProt] putative membrane protein
59Sb2_058155002..55361 [-], 360323669694  [UniProt] possible exported protein
60Sb2_059155384..55551 [+], 168323669695  [UniProt] -
61Sb2_060155648..56895 [+], 1248323669696  [UniProt] putative ybdN proteinVF
62Sb2_061156880..57521 [+], 642323669697  [UniProt] putative plasmid replication proteinVF
63Sb2_062157605..58351 [+], 747323669698  [UniProt] putative MipA-domain protein
64Sb2_063158440..59048 [-], 609323669699  [UniProt] hypothetical protein
65Sb2_064160362..61282 [+], 921323669700  [UniProt] putative DNA binding protein
66Sb2_065161752..62261 [+], 510323669701  [UniProt] putative topoisomerase
67Sb2_066162358..62738 [+], 381323669702  [UniProt] putative DNA binding protein
68Sb2_067163204..63788 [+], 585323669703  [UniProt] hypothetical protein
69Sb2_068163785..64081 [+], 297323669704  [UniProt] hypothetical protein
70Sb2_069164159..64617 [+], 459323669705  [UniProt] putative membrane protein
71Sb2_070164706..66649 [+], 1944323669706  [UniProt] putative membrane proteinVF
72Sb2_071166719..67627 [+], 909323669707  [UniProt] conserved hypothetical protein
73Sb2_072167705..68604 [+], 900323669708  [UniProt] putative ABC tranporter
74Sb2_073168681..69007 [+], 327323669709  [UniProt] conserved hypothetical protein
75Sb2_074169107..69376 [-], 270323669710  [UniProt] hypothetical protein
76Sb2_075169508..70782 [-], 1275323669711  [UniProt] UV protection protein
77samA70782..71204 [-], 423323669712  [UniProt] UV protection protein
78Sb2_077171546..72019 [-], 474323669713  [UniProt] conserved hypothetical protein
79Sb2_078172391..73038 [+], 648323669714  [UniProt] putative fluoroquinolone resistance protein
80Sb2_079173750..74127 [+], 378323669715  [UniProt] putative SH3 domain protein
81Sb2_080174251..74643 [+], 393323669716  [UniProt] putative Glyoxalase/Bleomycin resistance protein
82Sb2_081174901..75188 [+], 288323669717  [UniProt] hypothetical protein
83Sb2_082175199..76083 [+], 885323669718  [UniProt] Putative methyltransferase
84Sb2_083176083..76829 [+], 747323669719  [UniProt] conserved hypothetical protein
85Sb2_084176891..77502 [+], 612323669720  [UniProt] putative dienelactone hydrolase
86Sb2_085178013..78873 [-], 861323669721  [UniProt] putative AraC family transcriptional regulator
87Sb2_086179351..79557 [-], 207pseudogene putative kinase (partial)
88Sb2_087179605..79868 [+], 264323669722  [UniProt] hypothetical protein
89Sb2_088179993..81504 [+], 1512323669723  [UniProt] putative DNA helicase
90Sb2_089181488..83077 [+], 1590323669724  [UniProt] hypothetical protein
91Sb2_090183241..84254 [+], 1014323669725  [UniProt] probable phage integrase
92Sb2_091184614..85321 [-], 708323669726 putative membrane protein
93speC85747..87882 [+], 2136323669727 ornithine decarboxylase
94nupG87944..89200 [-], 1257323669728 nucleoside permease
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins88Fasta
(1) Moreno Switt AI; den Bakker HC; Cummings CA; Rodriguez-Rivera LD; Govoni G; Raneiri ML; Degoricija L; Brown S; Hoelzer K; Peters JE; Bolchacova E; Furtado MR; Wiedmann M (2012). Identification and characterization of novel Salmonella mobile elements involved in the dissemination of genes linked to virulence and transmission. PLoS One. 7(7):e41247. [PudMed:22911766] in_silico
(2) Seth-Smith HM; Fookes MC; Okoro CK; Baker S; Harris SR; Scott P; Pickard D; Quail MA; Churcher C; Sanders M; Harmse J; Dougan G; Parkhill J; Thomson NR (2012). Structure, diversity, and mobility of the Salmonella pathogenicity island 7 family of integrative and conjugative elements within Enterobacteriaceae. J Bacteriol. 194(6):1494-504. [PudMed:22247511] in_silico
 
in_silico in silico analysis literature