ICEberg
ICEberg ID115
NameICESe3
FamilyUnclassified
OrganismSalmonella enterica SARC16
Size (bp)104487
GC content [Genome] (%)52.2
Insertion sitetRNA-Phe
Function-
Species that ICE can be transferred to-
Nucleotide SequenceFN298495 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates28577..133063
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of ICESe3 form FN298495
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1S16_002524192..26405 [-], 2214327412952 putative RHS/VGR-family protein
2hcp26632..27150 [-], 519327412953 hcp (haemolysin co-regulated protein)
3S16_002727755..28015 [+], 261pseudogene putative type VI secretion system protein (pseudogene)
4S16_002828015..28356 [+], 342pseudogene putative type VI secretion system protein (pseudogene)
5S16_002928733..29740 [+], 1008327412954  [UniProt] hypothetical protein
6S16_003029737..30159 [+], 423327412955  [UniProt] hypothetical protein
7S16_003130156..31520 [+], 1365327412956  [UniProt] DNA helicase
8S16_003231513..33324 [+], 1812327412957  [UniProt] hypothetical protein
9S16_003333314..33538 [+], 225327412958  [UniProt] putative transcriptional regulator: zinc-finger
10S16_003433535..33798 [+], 264327412959  [UniProt] hypothetical protein
11S16_003533785..34507 [+], 723327412960  [UniProt] conserved hypothetical protein
12S16_003634571..35143 [+], 573327412961  [UniProt] conserved hypothetical protein
13S16_003735143..35391 [+], 249327412962  [UniProt] conserved hypothetical protein
14S16_003835512..36798 [+], 1287327412963  [UniProt] conserved hypothetical protein
15S16_003937291..38130 [+], 840327412964  [UniProt] conserved hypothetical protein
16topB38159..40177 [+], 2019327412965  [UniProt] DNA topoisomerase B
17S16_004140883..41332 [+], 450327412966  [UniProt] conserved hypothetical protein
18S16_004241413..41631 [+], 219327412967  [UniProt] conserved hypothetical protein
19ssB41644..42180 [+], 537327412968  [UniProt] single stranded binding proteinVF
20S16_004442246..43244 [+], 999327412969  [UniProt] putative transposase
21S16_004543402..43632 [+], 231327412970  [UniProt] putative membrane protein
22pilL43728..44957 [+], 1230327412971  [UniProt] putative exported proteinVF
23pilM44960..45397 [+], 438327412972  [UniProt] putative exported protein
24pilN45409..47091 [+], 1683327412973  [UniProt] PilN (lipoprotein)VF
25pilO47093..48373 [+], 1281327412974  [UniProt] putative pilus assembly protein
26S16_005148360..48953 [+], 594327412975  [UniProt] putative pilus assembly protein
27pilQ49123..50838 [+], 1716327412976  [UniProt] putative nucleotide-binding proteinVF
28pilR50835..51920 [+], 1086327412977  [UniProt] putative membrane proteinVF
29pilS51920..52555 [+], 636327412978  [UniProt] prepilinVF
30pilT52568..53047 [+], 480327412979  [UniProt] putative membrane protein
31pilU53044..53703 [+], 660327412980  [UniProt] putative prepilin peptidase
32pilV53703..55001 [+], 1299327412981  [UniProt] putative prepilinVF
33rci55545..56696 [+], 1152327412982  [UniProt] shufflon-specific DNA recombinase
34pilK56792..57262 [+], 471327412983  [UniProt] putative exported protein
35S16_006157475..58350 [+], 876327412984  [UniProt] conserved hypothetical protein
36S16_006258496..59692 [+], 1197327412985  [UniProt] putative exported proteinVF
37S16_006359757..60407 [+], 651327412986  [UniProt] conserved hypothetical protein
38S16_006460465..60986 [+], 522327412987  [UniProt] hypothetical protein
39S16_006561003..61275 [+], 273327412988  [UniProt] hypothetical protein
40S16_006661330..61593 [+], 264327412989  [UniProt] hypothetical protein
41S16_006761802..62722 [+], 921327412990  [UniProt] putative membrane protein
42S16_006862741..63481 [+], 741327412991  [UniProt] putative exported protein
43S16_006963460..64149 [+], 690327412992  [UniProt] putative lytic transglycosylase
44S16_007064146..64676 [+], 531327412993  [UniProt] conserved hypothetical protein
45S16_007164696..65259 [+], 564327412994  [UniProt] putative membrane protein
46S16_007265378..67534 [+], 2157327412995  [UniProt] putative membrane protein
47S16_007367527..68291 [+], 765327412996  [UniProt] putative membrane protein
48S16_007468439..68762 [+], 324327412997  [UniProt] putative membrane protein
49S16_007568759..68995 [+], 237327412998  [UniProt] putative membrane protein
50S16_007769019..69357 [+], 339327412999  [UniProt] putative membrane protein
51S16_007869366..69755 [+], 390327413000  [UniProt] putative membrane protein
52S16_007969752..70414 [+], 663327413001  [UniProt] possible membrane protein
53S16_008170411..71268 [+], 858327413002  [UniProt] putative exported protein
54S16_008271268..72755 [+], 1488327413003  [UniProt] putative membrane protein
55S16_008372769..73194 [+], 426327413004  [UniProt] putative lipoprotein
56S16_008473194..75992 [+], 2799327413005  [UniProt] conserved hypothetical protein
57S16_008575989..76366 [+], 378327413006  [UniProt] conserved hypothetical protein
58S16_0090a76767..77878 [-], 1112327413007  [UniProt] putative transposase
59S16_009077612..77878 [-], 267327413008  [UniProt] putative transposase
60S16_009178143..79276 [+], 1134327413009  [UniProt] putative membrane protein
61etpB79882..81681 [+], 1800327413010  [UniProt] putative two partner secretion system
62etpA81889..88230 [+], 6342327413011  [UniProt] putative two partner secretion system
63etpC88345..90366 [+], 2022327413012  [UniProt] putative glycosylase
64S16_009590363..90917 [+], 555327413013  [UniProt] putative membrane protein
65S16_009891325..91819 [+], 495327413014  [UniProt] conserved hypothetical protein
66S16_009991812..92552 [+], 741327413015  [UniProt] hypothetical protein
67S16_010092549..92839 [+], 291pseudogene putative regulator (pseudogene)
68ibrB92890..93523 [+], 634pseudogene putative regulator (pseudogene)
69S16_010393546..93872 [+], 327327413016  [UniProt] conserved hypothetical protein
70Y106293926..95132 [-], 1207pseudogene putative transposase (pseudogene)
71S16_010896377..96832 [-], 456327413017  [UniProt] conserved hypothetical protein
72S16_010996859..97290 [-], 432327413018  [UniProt] hypothetical protein
73S16_011097851..98441 [+], 591327413019  [UniProt] putative fimbrial protein precursor
74S16_011198504..100978 [+], 2475327413020  [UniProt] fimbrial usher protein precursorVF
75S16_0112100991..101722 [+], 732327413021  [UniProt] fimbrial chaperone protein precursorVF
76S16_0113101797..102756 [+], 960327413022  [UniProt] putative fimbrial protein
77S16_0114103044..103483 [-], 440pseudogene putative transcriptional regulator-AraC family (pseudogene)
78S16_0118103783..104788 [-], 1006pseudogene putative transposase (pseudogene)
79S16_0119104856..105083 [-], 228pseudogene putative transposase (pseudogene)
80S16_0122106507..107174 [+], 668pseudogene hypothetical protein (pseudogene)
81S16_0123107197..107523 [+], 327327413023  [UniProt] conserved hypothetical protein
82S16_0124107701..108084 [-], 384327413024  [UniProt] conserved hypothetical protein
83S16_0126108270..108547 [+], 278pseudogene putative exported protein (pseudogene)
84S16_0127108874..109266 [+], 393327413025  [UniProt] putative exported protein
85S16_0128109263..110243 [+], 981327413026  [UniProt] putative exported protein
86S16_0129110256..111662 [+], 1407327413027  [UniProt] putative exported protein
87S16_0130111664..112047 [+], 384327413028  [UniProt] putative membrane protein
88S16_0131112058..113584 [+], 1527327413029  [UniProt] putative membrane protein
89S16_0132113623..114120 [-], 498327413030  [UniProt] hypothetical protein
90S16_0133114306..114653 [-], 348327413031  [UniProt] conserved hypothetical protein
91S16_0134115139..115762 [+], 624327413032  [UniProt] conserved hypothetical protein
92S16_0135116794..117702 [+], 909327413033  [UniProt] conserved hypothetical protein
93S16_0136117704..118078 [+], 375327413034  [UniProt] hypothetical protein
94S16_0137118433..118819 [+], 387pseudogene conserved hypothetical protein (pseudogene)
95S16_0138118897..119265 [+], 369327413035  [UniProt] conserved hypothetical protein
96S16_0141119728..120311 [+], 584pseudogene conserved hypothetical protein (pseudogene)
97S16_0143120308..120604 [+], 297327413036  [UniProt] conserved hypothetical protein
98S16_0144120682..121140 [+], 459327413037  [UniProt] conserved hypothetical protein
99S16_0145121230..123164 [+], 1935327413038  [UniProt] conserved hypothetical proteinVF
100S16_0146123235..124143 [+], 909327413039  [UniProt] conserved hypothetical protein
101S16_0147124217..125116 [+], 900327413040  [UniProt] conserved hypothetical protein
102S16_0148125192..125518 [+], 327327413041  [UniProt] conserved hypothetical protein
103-125613..125879 [-], 267327413042  [UniProt] conserved hypothetical protein
104S16_0149125941..126396 [-], 456327413043  [UniProt] putative exported protein
105samB126605..127879 [-], 1275327413044  [UniProt] UV protection protein
106samA127879..128301 [-], 423pseudogene UV protection protein (pseudogene)
107S16_0152128597..130090 [+], 1494327413045  [UniProt] putative DNA helicase
108S16_0153130080..131708 [+], 1629327413046  [UniProt] putative relaxase
109S16_0154131824..132837 [+], 1014327413047  [UniProt] putative phage integrase
110yqgA133245..133952 [-], 708327413048 putative membrane protein
111speC134377..136512 [+], 2136327413049 ornithine decarboxylase, constitutive (ec 4.1.1.17)
112S16_0156a136576..137373 [-], 798pseudogene putative nucleoside permease
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins94Fasta
(1) Moreno Switt AI; den Bakker HC; Cummings CA; Rodriguez-Rivera LD; Govoni G; Raneiri ML; Degoricija L; Brown S; Hoelzer K; Peters JE; Bolchacova E; Furtado MR; Wiedmann M (2012). Identification and characterization of novel Salmonella mobile elements involved in the dissemination of genes linked to virulence and transmission. PLoS One. 7(7):e41247. [PudMed:22911766] in_silico
(2) Seth-Smith HM; Fookes MC; Okoro CK; Baker S; Harris SR; Scott P; Pickard D; Quail MA; Churcher C; Sanders M; Harmse J; Dougan G; Parkhill J; Thomson NR (2012). Structure, diversity, and mobility of the Salmonella pathogenicity island 7 family of integrative and conjugative elements within Enterobacteriaceae. J Bacteriol. 194(6):1494-504. [PudMed:22247511] in_silico
 
in_silico in silico analysis literature