ICEberg
ICEberg ID12
NameICEVchBan5
FamilySXT/R391
OrganismVibrio cholerae O1 Ban5
Size (bp)102122
GC content [Genome] (%)47.3
Insertion siteprfC
FunctionAntibiotic resistance genes: floR, strBA, sul2, dfrA1; glyoxoylase abx resistance
Species that ICE can be transferred to-
Nucleotide SequenceGQ463140 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1..102122
Link to view genome context of this ICE in the genome browser
experimental This is a ICE derived from experimental literature.
Complete gene list of ICEVchBan5 form GQ463140
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1ICEVCHBAN5_0001415..603 [+], 189259156197  [UniProt] conserved domain protein
2ICEVCHBAN5_0002749..2767 [+], 2019259156238  [UniProt] putative DNA mismatch repair protein
3ICEVCHBAN5_00032897..4138 [-], 1242259156240  [UniProt] integrase
4ICEVCHBAN5_00044140..4313 [-], 174259156225  [UniProt] conserved hypothetical protein
5ICEVCHBAN5_00054412..5386 [-], 975259156233  [UniProt] conserved hypothetical protein
6ICEVCHBAN5_00065482..5649 [+], 168259156277  [UniProt] hypothetical protein
7ICEVCHBAN5_00075694..5828 [+], 135259156266  [UniProt] hypothetical protein
8ICEVCHBAN5_00085851..6294 [+], 444259156237  [UniProt] conserved hypothetical protein
9ICEVCHBAN5_00096305..7477 [-], 1173259156251  [UniProt] protein UmuC
10ICEVCHBAN5_00107761..8354 [+], 594259156221  [UniProt] transposase, IS3 family, interruption
11ICEVCHBAN5_00118468..11446 [+], 2979259156208  [UniProt] transposase
12ICEVCHBAN5_001211864..13357 [+], 1494259156218  [UniProt] iscr2 transposase
13ICEVCHBAN5_001313388..14272 [+], 885259156210  [UniProt] conserved hypothetical proteinAR
14ICEVCHBAN5_001414489..15703 [+], 1215259156213  [UniProt] florfenicol/chloramphenicol resistance proteinAR
15ICEVCHBAN5_001515758..16036 [+], 279259156183  [UniProt] truncated helix-turn-helix multiple antibiotic resistance protein
16ICEVCHBAN5_001616148..17641 [+], 1494259156255  [UniProt] iscr2 transposase
17ICEVCHBAN5_001717672..18556 [+], 885259156217  [UniProt] conserved hypothetical proteinAR
18ICEVCHBAN5_001818773..19987 [+], 1215259156224  [UniProt] florfenicol/chloramphenicol resistance proteinAR
19ICEVCHBAN5_001920042..20320 [+], 279259156223  [UniProt] truncated helix-turn-helix multiple antibiotic resistance protein
20ICEVCHBAN5_002120432..20971 [+], 540259156272  [UniProt] truncated transposase
21ICEVCHBAN5_002020943..21773 [-], 831259156264  [UniProt] streptomycin resistance protein BAR
22ICEVCHBAN5_002221779..22582 [-], 804259156205  [UniProt] streptomycin 3''-kinaseAR
23folP22643..23458 [-], 816259156261  [UniProt] dihydropteroate synthaseAR
24ICEVCHBAN5_002523929..25281 [+], 1353259156219  [UniProt] TnpA
25ICEVCHBAN5_002425273..26484 [-], 1212259156252  [UniProt] transposase, Mutator family
26ICEVCHBAN5_002626542..27045 [-], 504259156186  [UniProt] MutL protein
27ICEVCHBAN5_002727198..27467 [-], 270259156279  [UniProt] ultraviolet light resistance protein B
28ICEVCHBAN5_002827475..27924 [-], 450259156259  [UniProt] protein UmuD
29ICEVCHBAN5_002928043..28180 [+], 138259156242  [UniProt] hypothetical protein
30ICEVCHBAN5_003028564..29469 [+], 906259156231  [UniProt] exonuclease, RNase T and DNA polymerase III
31ICEVCHBAN5_003129557..29856 [+], 300259156204  [UniProt] conserved hypothetical protein
32ICEVCHBAN5_003230174..31094 [+], 921259156189  [UniProt] conserved hypothetical protein
33ICEVCHBAN5_003331112..31912 [+], 801259156199  [UniProt] hypothetical protein
34ICEVCHBAN5_003431896..32444 [+], 549259156188  [UniProt] conserved hypothetical protein
35ICEVCHBAN5_003532457..36146 [+], 3690259156262  [UniProt] conserved hypothetical protein
36ICEVCHBAN5_003636151..39891 [+], 3741259156263  [UniProt] conserved hypothetical protein
37ICEVCHBAN5_003739904..42207 [+], 2304259156246  [UniProt] PglZ domain family
38ICEVCHBAN5_003842246..44297 [+], 2052259156191  [UniProt] conserved hypothetical protein
39ICEVCHBAN5_003944324..45094 [+], 771259156229  [UniProt] conserved hypothetical protein
40ICEVCHBAN5_004145129..45944 [+], 816259156195  [UniProt] conserved hypothetical protein
41ICEVCHBAN5_004045921..46043 [-], 123259156214  [UniProt] hypothetical protein
42ICEVCHBAN5_004246066..48216 [+], 2151259156190  [UniProt] conjugative relaxase
43ICEVCHBAN5_004348265..50085 [+], 1821259156182  [UniProt] conjugative coupling factor
44ICEVCHBAN5_004450095..50655 [+], 561259156201  [UniProt] conserved hypothetical protein
45ICEVCHBAN5_004550642..51277 [+], 636259156278  [UniProt] putative conjugation coupling factor
46ICEVCHBAN5_004651304..51891 [-], 588259156209  [UniProt] conserved hypothetical protein
47traL52180..52461 [+], 282259156207  [UniProt] type IV conjugative transfer system protein TraL
48ICEVCHBAN5_004852458..53084 [+], 627259156273  [UniProt] sex pilus assembly
49ICEVCHBAN5_004953068..53964 [+], 897259156212  [UniProt] TraK
50ICEVCHBAN5_005053967..55256 [+], 1290259156236  [UniProt] sex pilus assembly
51ICEVCHBAN5_005155331..55903 [+], 573259156187  [UniProt] sex pilus assembly
52ICEVCHBAN5_005255900..56286 [+], 387259156184  [UniProt] TraA
53ICEVCHBAN5_005356507..57298 [+], 792259156206  [UniProt] conserved hypothetical proteinTA
54ICEVCHBAN5_005457291..58229 [+], 939259156200  [UniProt] yncTA
55ICEVCHBAN5_005558361..59053 [+], 693259156267  [UniProt] DsbC
56traC59053..61452 [+], 2400259156268  [UniProt] type-IV secretion system protein TraC
57ICEVCHBAN5_005761445..61792 [+], 348259156247  [UniProt] conserved hypothetical protein
58ICEVCHBAN5_005861776..62288 [+], 513259156274  [UniProt] conjugation signal peptidase
59ICEVCHBAN5_006063407..64435 [+], 1029259156216  [UniProt] sex pilus assembly
60ICEVCHBAN5_006164438..68130 [+], 3693259156269  [UniProt] mating pair stabilization
61ICEVCHBAN5_006268221..69837 [-], 1617259156275  [UniProt] conserved hypothetical protein
62ICEVCHBAN5_006369917..70672 [-], 756259156228  [UniProt] IstB domain protein ATP-binding protein
63ICEVCHBAN5_006470662..72170 [-], 1509259156203  [UniProt] integrase, catalytic region
64ICEVCHBAN5_006572269..73348 [-], 1080259156270  [UniProt] SMC domain protein
65ICEVCHBAN5_006673516..74199 [-], 684259156249  [UniProt] endonuclease-1 (Endonuclease I) (Endo I)
66ICEVCHBAN5_006774308..74910 [-], 603259156232  [UniProt] conserved hypothetical protein
67ICEVCHBAN5_006875278..75604 [+], 327259156185  [UniProt] conserved hypothetical protein
68ICEVCHBAN5_006975620..76039 [+], 420259156215  [UniProt] single-strand binding protein familyVF
69ICEVCHBAN5_007076119..76937 [+], 819259156198  [UniProt] phage recombination protein Bet
70ICEVCHBAN5_007177019..77162 [+], 144259156227  [UniProt] hypothetical protein
71ICEVCHBAN5_007277223..78239 [+], 1017259156254  [UniProt] YqaJ viral recombinase family
72ICEVCHBAN5_007478332..79408 [+], 1077259156235  [UniProt] ATPase associated with various cellular activities, AAA_5
73ICEVCHBAN5_007378428..78550 [-], 123259156220  [UniProt] hypothetical protein
74ICEVCHBAN5_007579408..80175 [+], 768259156211  [UniProt] conserved hypothetical protein
75ICEVCHBAN5_007680274..81227 [+], 954259156234  [UniProt] conserved hypothetical protein
76ICEVCHBAN5_007781289..81729 [+], 441259156192  [UniProt] conserved hypothetical protein
77ICEVCHBAN5_007881799..83454 [+], 1656259156250  [UniProt] von Willebrand factor, type A
78radC83539..84036 [+], 498259156276  [UniProt] DNA repair protein RadCVF
79ICEVCHBAN5_008084036..84377 [+], 342259156241  [UniProt] conserved hypothetical protein
80ICEVCHBAN5_008184468..85541 [+], 1074259156244  [UniProt] phage P4 alpha, zinc-binding domain protein
81ICEVCHBAN5_008285631..86338 [+], 708259156248  [UniProt] conserved hypothetical protein
82ICEVCHBAN5_008486610..87014 [+], 405259156243  [UniProt] glyoxalase/bleomycin resistance protein/dioxygenase
83ICEVCHBAN5_008387011..87712 [-], 702259156258  [UniProt] conserved hypothetical protein
84ICEVCHBAN5_008587812..88174 [-], 363259156271  [UniProt] conserved hypothetical protein
85ICEVCHBAN5_008688245..88655 [-], 411259156265  [UniProt] membrane associated protein containing xre-family DNA-binding HTH domain
86ICEVCHBAN5_008788853..89278 [-], 426259156226  [UniProt] conserved hypothetical protein
87folA89383..89856 [-], 474259156202  [UniProt] dihydrofolate reductaseAR
88ICEVCHBAN5_008991074..91214 [-], 141259156260  [UniProt] hypothetical protein
89ICEVCHBAN5_009191360..92304 [+], 945259156193  [UniProt] conserved hypothetical protein
90ICEVCHBAN5_009292307..93695 [+], 1389259156245  [UniProt] sex pilus assembly
91ICEVCHBAN5_009393699..97268 [+], 3570259156230  [UniProt] sex pilus assembly
92ICEVCHBAN5_009497301..97732 [-], 432259156181  [UniProt] EexR1
93ICEVCHBAN5_009597790..98323 [-], 534259156222  [UniProt] transcriptional activator
94ICEVCHBAN5_009698320..98619 [-], 300259156253  [UniProt] SetD
95ICEVCHBAN5_009798616..99164 [-], 549259156194  [UniProt] lytic transglycosylase, catalytic
96ICEVCHBAN5_009899151..99813 [-], 663259156280  [UniProt] conserved hypothetical protein
97ICEVCHBAN5_009999800..100669 [-], 870259156196  [UniProt] conserved hypothetical protein
98ICEVCHBAN5_0100100725..100976 [-], 252259156256  [UniProt] SetQ
99ICEVCHBAN5_0101101094..101741 [+], 648259156257  [UniProt] HTH-type transcriptional regulator for conjugative element R391
100ICEVCHBAN5_0102101998..102122 [+], 125259156239  [UniProt] peptide termination factor
 
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer
regulation Gene may play role in regulation of transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins100Fasta
(1) Wozniak RA; Fouts DE; Spagnoletti M; Colombo MM; Ceccarelli D; Garriss G; Dery C; Burrus V; Waldor MK (2009). Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs. PLoS Genet. 5(12):e1000786. [PudMed:20041216] in_silico
(2) Marrero J; Waldor MK (2007). The SXT/R391 family of integrative conjugative elements is composed of two exclusion groups. J Bacteriol. 189(8):3302-5. [PudMed:17307849] experimental
 
experimental experimental literature
in_silico in silico analysis literature