ICEberg
ICEberg ID128
NameICEDdaEch586-1
FamilyICEKp1
OrganismDickeya dadantii Ech586
Size (bp)51067
GC content [Genome] (%)48 [54]
Insertion sitetRNA-asn(Dd586_R0052)
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP001836 (complete ICE sequence in this genome)
Replicon chromosome (4818394 bp, Project:42519) [NC_013592]
Genome coordinates2972027..3023093
Link to view genome context of this ICE in the genome browser
in_silico This is a putative ICE identified in this study by Blast.
Complete gene list of ICEDdaEch586-1 form CP001836
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1Dd586_26332967367..2968440 [+], 1074270344712 transcriptional regulator, LacI family
2Dd586_26342968629..2971739 [+], 3111270344713 glycoside hydrolase family 2 TIM barrel
3Dd586_26352972189..2973460 [+], 1272270344714  [UniProt]  [KEGG]integrase family proteinVF
4Dd586_26372973922..2974164 [-], 243270344715  [UniProt]  [KEGG]twin-arginine translocation protein, TatA/E family subunit
5Dd586_26382974312..2975388 [-], 1077270344716  [UniProt]  [KEGG]conserved hypothetical protein
6Dd586_26392975451..2975828 [-], 378270344717  [UniProt]  [KEGG]protein of unknown function DUF1330
7Dd586_26402976019..2976912 [-], 894270344718  [UniProt]  [KEGG]transcriptional regulator, LysR family
8Dd586_26412977397..2978092 [+], 696270344719  [UniProt]  [KEGG]two component transcriptional regulator, winged helix familyVF
9Dd586_26422978101..2979489 [+], 1389270344720  [UniProt]  [KEGG]multi-sensor signal transduction histidine kinase
10Dd586_26432979581..2979835 [-], 255270344721  [UniProt]  [KEGG]protein of unknown function DUF1471
11Dd586_26442980141..2981265 [+], 1125270344722  [UniProt]  [KEGG]dienelactone hydrolase
12Dd586_26452981371..2982030 [+], 660270344723  [UniProt]  [KEGG]flavodoxin
13Dd586_26462982051..2982737 [+], 687270344724  [UniProt]  [KEGG]conserved hypothetical protein
14Dd586_26472982878..2983621 [-], 744270344725  [UniProt]  [KEGG]NAD(P)H dehydrogenase (quinone)
15Dd586_26482983646..2984407 [-], 762270344726  [UniProt]  [KEGG]short-chain dehydrogenase/reductase SDR
16Dd586_26492984611..2985753 [-], 1143270344727  [UniProt]  [KEGG]NADH:flavin oxidoreductase/NADH oxidase
17Dd586_26502986038..2986676 [-], 639270344728  [UniProt]  [KEGG]flavodoxin/nitric oxide synthase
18Dd586_26512986814..2987827 [-], 1014270344729  [UniProt]  [KEGG]Alcohol dehydrogenase zinc-binding domain protein
19Dd586_26522988178..2989173 [+], 996270344730  [UniProt]  [KEGG]aldo/keto reductase
20Dd586_26532989300..2989977 [-], 678270344731  [UniProt]  [KEGG]NAD(P)H dehydrogenase (quinone)
21Dd586_26542990289..2990882 [-], 594270344732  [UniProt]  [KEGG]NAD(P)H dehydrogenase (quinone)
22Dd586_26552991101..2992003 [+], 903270344733  [UniProt]  [KEGG]transcriptional regulator, AraC family
23Dd586_26572992682..2993596 [+], 915270344734  [UniProt]  [KEGG]conserved hypothetical protein
24Dd586_26582993749..2993943 [+], 195270344735  [UniProt]  [KEGG]phage transcriptional regulator, AlpAVF
25Dd586_26592993958..2994542 [+], 585270344736  [UniProt]  [KEGG]conserved hypothetical protein
26Dd586_26602994532..2994735 [+], 204270344737  [UniProt]  [KEGG]transcriptional regulator, TraR/DksA family
27Dd586_26612994911..2995762 [-], 852270344738  [UniProt]  [KEGG]transcriptional regulator, LysR family
28Dd586_26622995862..2996725 [+], 864270344739  [UniProt]  [KEGG]protein of unknown function DUF6 transmembrane
29Dd586_26632997209..2997442 [+], 234270344740  [UniProt]  [KEGG]conserved hypothetical protein
30Dd586_26642997519..2998226 [+], 708270344741  [UniProt]  [KEGG]Lytic transglycosylase catalytic
31Dd586_26652998226..2998519 [+], 294270344742  [UniProt]  [KEGG]Conjugal transfer protein TrbC
32Dd586_26662998530..3001274 [+], 2745270344743  [UniProt]  [KEGG]CagE, TrbE, VirB component of type IV transporter system, conserved region
33Dd586_26673001295..3001999 [+], 705270344744  [UniProt]  [KEGG]type IV secretion system family protein
34Dd586_26683002011..3002235 [+], 225270344745  [UniProt]  [KEGG]conserved hypothetical protein
35Dd586_26693002246..3003310 [+], 1065270344746  [UniProt]  [KEGG]TrbL/VirB6 plasmid conjugal transfer protein
36Dd586_26703003394..3003531 [+], 138270344747  [UniProt]  [KEGG]conserved hypothetical protein
37Dd586_26713003524..3004207 [+], 684270344748  [UniProt]  [KEGG]VirB8 family protein
38Dd586_26723004207..3005112 [+], 906270344749  [UniProt]  [KEGG]P-type conjugative transfer protein VirB9
39Dd586_26733005132..3006373 [+], 1242270344750  [UniProt]  [KEGG]conjugation TrbI family protein
40Dd586_26743006366..3006752 [+], 387270344751  [UniProt]  [KEGG]hypothetical protein
41Dd586_26753006683..3007690 [-], 1008270344752  [UniProt]  [KEGG]conserved hypothetical protein
42Dd586_26763007728..3008747 [+], 1020270344753  [UniProt]  [KEGG]P-type DNA transfer ATPase VirB11VF
43Dd586_26773008744..3009142 [+], 399270344754  [UniProt]  [KEGG]conserved hypothetical protein
44Dd586_26783009188..3009490 [+], 303270344755  [UniProt]  [KEGG]KikA from plasmid origin; putative exported protein
45Dd586_26793009540..3009845 [+], 306270344756  [UniProt]  [KEGG]conserved hypothetical protein
46Dd586_26813010556..3012415 [+], 1860270344757  [UniProt]  [KEGG]putative MobB mobilization protein
47Dd586_26823012425..3013171 [+], 747270344758  [UniProt]  [KEGG]mobilization protein
48Dd586_26833013367..3014314 [-], 948270344759  [UniProt]  [KEGG]domain of unknown function DUF1738
49Dd586_26843014599..3016797 [-], 2199270344760  [UniProt]  [KEGG]helicase domain protein
50Dd586_26853016841..3018469 [-], 1629270344761  [UniProt]  [KEGG]conserved hypothetical protein
51Dd586_26863019385..3020161 [-], 777270344762  [UniProt]  [KEGG]short-chain dehydrogenase/reductase SDR
52Dd586_26873020192..3020485 [-], 294270344763  [UniProt]  [KEGG]Stress responsive alpha-beta barrel domain protein
53Dd586_26883020496..3021557 [-], 1062270344764  [UniProt]  [KEGG]Alcohol dehydrogenase zinc-binding domain protein
54Dd586_26893021707..3022666 [+], 960270344765  [UniProt]  [KEGG]transcriptional regulator, LysR family
55Dd586_26903023663..3024925 [+], 1263270344766 glycosyl transferase family 28
56Dd586_26913025156..3026919 [+], 1764270344767 gamma-glutamyltransferase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins52Fasta
Identified as part of this study from CP001836