ICEberg
ICEberg ID129
NameICEEcoED1a-1
FamilyICEKp1
OrganismEscherichia coli ED1a
Size (bp)58182
GC content [Genome] (%)53 [51]
Insertion sitetRNA-asn(ECED1_tRNA22)
FunctionYersiniabactin synthesis
Species that ICE can be transferred to-
Nucleotide SequenceCU928162 (complete ICE sequence in this genome)
Replicon chromosome (5209548 bp, Project:33409) [NC_011745]
Genome coordinates2164157..2222338
Link to view genome context of this ICE in the genome browser
in_silico This is a putative ICE identified in this study by Blast.
Complete gene list of ICEEcoED1a-1 form CU928162
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1yedZ2160015..2160650 [+], 636218427529 heme-molybdoenzyme heme-containing subunit YedZ; cytochrome b subunit
2yodA2160907..2161557 [+], 651218427530 conserved hypothetical protein; putative metal-binding protein
3ECED1_22392161667..2161816 [+], 150218427531 conserved hypothetical protein
4yodB2161900..2162430 [+], 531218427532 putative cytochrome
5yeeI2163183..2163980 [+], 798218427533 conserved hypothetical protein
6int2164318..2165580 [+], 1263218427534  [UniProt] integraseVF
7irp2165774..2167078 [-], 1305218427535  [UniProt] Salicylate synthaseVF
8irp2167106..2168509 [-], 1404218427536  [UniProt] putative permease of yersiniabactin-iron transporter YbtXVF
9irp2168379..2170208 [-], 1830218427537  [UniProt] permease and ATP-binding protein of yersiniabactin-iron ABC transporter YbtQVF
10irp2170168..2171970 [-], 1803218427538  [UniProt] permease and ATP-binding protein of yersiniabactin-iron ABC transporter YbtPVF
11ybtA2172137..2173096 [+], 960218427539  [UniProt] AraC type regulator of yersiniabactin gene cluster (HPI)VF
12irp2173269..2179394 [+], 6126218427540  [UniProt] High-molecular-weight nonribosomal peptide/polyketide synthetase 2 (HMWP2)VF
13irp2179482..2188973 [+], 9492218427541  [UniProt] High-molecular-weight nonribosomal peptide/polyketide synthetase 1 (HMWP1)VF
14irp2188910..2190070 [+], 1161218427542  [UniProt] Thiazolinyl-S-HMWP1 reductase YbtUVF
15irp2190067..2190870 [+], 804218427543  [UniProt] putative thioesterase YbtTVF
16irp2190874..2192451 [+], 1578218427544  [UniProt] salicyl-AMP ligase YbtEVF
17fyuA2192582..2194603 [+], 2022218427545  [UniProt] Yersiniabactin/pesticin outer membrane receptor (IRPC)VF
18ECED1_22552195417..2196400 [+], 984218427546  [UniProt] conserved hypothetical protein
19ECED1_22562196744..2196929 [+], 186218427547  [UniProt] conserved hypothetical protein
20ECED1_22572196914..2197495 [+], 582218427548  [UniProt] conserved hypothetical protein
21ECED1_22582197485..2197694 [+], 210218427549  [UniProt] putative lambdoid prophage protein from the DksA/TraR family with a zinc finger
22ECED1_22592197937..2198065 [+], 129218427550  [UniProt] conserved hypothetical proteinVF
23ECED1_22602198634..2198867 [+], 234218427551  [UniProt] conserved hypothetical protein
24ECED1_22612198922..2199650 [+], 729218427552  [UniProt] putative type IV secretory pathway VirB1 component
25ECED1_22622199650..2199943 [+], 294218427553  [UniProt] putative type IV secretory pathway VirB2 component
26ECED1_22632199956..2202694 [+], 2739218427554  [UniProt] putative type IV secretory pathway VirB4 component
27ECED1_22642202712..2203419 [+], 708218427555  [UniProt] putative type IV secretory pathway VirB5 component
28ECED1_22652203427..2203669 [+], 243218427556  [UniProt] conserved hypothetical protein; putative exported protein
29ECED1_22662203673..2204746 [+], 1074218427557  [UniProt] putative type IV secretory pathway VirB6 component
30ECED1_22672204968..2205651 [+], 684218427558  [UniProt] putative type IV secretory pathway VirB8 component
31ECED1_22682205648..2206556 [+], 909218427559  [UniProt] putative type IV secretory pathway VirB9 component
32ECED1_22692206586..2207842 [+], 1257218427560  [UniProt] putative type IV secretory pathway VirB10 component
33ECED1_22702207832..2208857 [+], 1026218427561  [UniProt] putative type IV secretory pathway VirB11 componentVF
34ECED1_22712208854..2209252 [+], 399218427562  [UniProt] conserved hypothetical protein; putative exported protein
35kikA2209288..2209593 [+], 306218427563  [UniProt] putative plasmid conjugation protein
36ECED1_22732209627..2209932 [+], 306218427564  [UniProt] conserved hypothetical protein
37ECED1_22742210612..2212501 [+], 1890218427565  [UniProt] putative MobB mobilization protein
38ECED1_22752212511..2213257 [+], 747218427566  [UniProt] putative MobC mobilization protein
39ECED1_22762213451..2214497 [-], 1047218427567  [UniProt] putative Antirestriction protein ardC
40ECED1_22772215060..2215323 [-], 264218427568  [UniProt] Transposase, ORF A, IS3 family, IS407 group
41ECED1_22782215465..2216523 [-], 1059218427569  [UniProt] conserved hypothetical protein
42ECED1_22792216529..2218313 [-], 1785218427570  [UniProt] conserved hypothetical protein
43ECED1_22802218310..2219875 [-], 1566218427571  [UniProt] putative Restriction modification system, type I similar to hsdS (fragment)
44ECED1_22812219872..2221545 [-], 1674218427572  [UniProt] putative HsdM; type I restriction modification enzyme methylase subunit
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins39Fasta
Identified as part of this study from CU928162