ICEberg
ICEberg ID157
NamepSE211
FamilyUnclassified
OrganismSaccharopolyspora erythraea NRRL 2338
Size (bp)17255
GC content [Genome] (%)69 [71]
Insertion sitetRNA-Phe(SACE_8046)
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAM420293 (complete ICE sequence in this genome)
Replicon chromosome (8212805 bp, Project:18489) [NC_009142]
Genome coordinates7823295..7840549
Link to view genome context of this ICE in the genome browser
experimental This is a ICE derived from experimental literature.
Complete gene list of pSE211 form AM420293
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1SACE_70007818396..7818518 [+], 123133916049 hypothetical protein
2SACE_70017818744..7820195 [-], 1452133916050 transcriptional regulator/aminotransferase
3SACE_70027820251..7820928 [+], 678133916051 protein of unknown function DUF161
4SACE_70037821039..7821386 [-], 348133916052 hypothetical protein
5SACE_70047821466..7823109 [-], 1644133916053 ABC transporter, ATP-binding component
6SACE_70067823972..7824727 [-], 756133916054  [UniProt]  [KEGG]secreted protein
7SACE_70077825079..7825630 [+], 552133916055  [UniProt]  [KEGG]metal dependent phosphohydrolase
8SACE_70087825982..7826080 [+], 99133916056  [UniProt]  [KEGG]hypothetical protein
9SACE_70097826104..7826691 [-], 588133916057  [UniProt]  [KEGG]transcriptional regulator, XRE family
10SACE_70107827044..7827244 [+], 201133916058  [UniProt]  [KEGG]hypothetical protein
11SACE_70117827771..7828064 [+], 294133916059  [UniProt]  [KEGG]hypothetical protein
12SACE_70127828064..7828279 [+], 216133916060  [UniProt]  [KEGG]hypothetical protein
13SACE_70137828279..7828716 [+], 438133916061  [UniProt]  [KEGG]hypothetical protein
14SACE_70147828766..7828945 [+], 180133916062  [UniProt]  [KEGG]hypothetical protein
15SACE_70157828964..7829224 [+], 261133916063  [UniProt]  [KEGG]hypothetical protein
16SACE_70167829271..7829531 [+], 261133916064  [UniProt]  [KEGG]hypothetical protein
17SACE_70177829585..7829845 [+], 261133916065  [UniProt]  [KEGG]hypothetical protein
18SACE_70187829880..7830269 [+], 390133916066  [UniProt]  [KEGG]uncharacterized P-loop ATPase protein UPF0042
19SACE_70197830284..7830469 [+], 186133916067  [UniProt]  [KEGG]hypothetical protein
20SACE_70207830560..7830886 [+], 327133916068  [UniProt]  [KEGG]hypothetical protein
21SACE_70217830901..7831116 [+], 216133916069  [UniProt]  [KEGG]hypothetical protein
22SACE_70227831140..7831964 [+], 825133916070  [UniProt]  [KEGG]hypothetical protein
23SACE_70237831961..7834141 [+], 2181133916071  [UniProt]  [KEGG]hypothetical protein
24SACE_70247834283..7834537 [+], 255133916072  [UniProt]  [KEGG]hypothetical protein
25SACE_70257834565..7834738 [+], 174133916073  [UniProt]  [KEGG]hypothetical protein
26SACE_70267834765..7835028 [+], 264133916074  [UniProt]  [KEGG]hypothetical protein
27SACE_70277835114..7835722 [+], 609133916075  [UniProt]  [KEGG]PAS:GGDEF
28SACE_70287835759..7836772 [+], 1014133916076  [UniProt]  [KEGG]hypothetical protein
29SACE_70297836799..7837473 [+], 675133916077  [UniProt]  [KEGG]hypothetical protein
30SACE_70307837506..7838822 [+], 1317133916078  [UniProt]  [KEGG]possible phiRv2 prophage protein
31SACE_70317838819..7839115 [+], 297133916079  [UniProt]  [KEGG]hypothetical protein
32int7839127..7840440 [+], 1314133916080  [UniProt]  [KEGG]integrase (recombinase)VF
33cprA7841143..7841757 [-], 615133916081 transcriptional regulator
34SACE_70347842020..7842259 [-], 240133916082 hypothetical protein
35SACE_70357842555..7842767 [+], 213133916083 heavy metal transport/detoxification protein
36SACE_70367843201..7843881 [+], 681133916084 hypothetical protein
37acdH7844023..7845174 [-], 1152133916085 acyl-CoA dehydrogenase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins27Fasta
(1) Bordeleau E; Brouillette E; Robichaud N; Burrus V (2010). Beyond antibiotic resistance: integrating conjugative elements of the SXT/R391 family that encode novel diguanylate cyclases participate to c-di-GMP signalling in Vibrio cholerae. Environ Microbiol. 12(2):510-23. [PudMed:19888998] experimental
(2) te Poele EM; Samborskyy M; Oliynyk M; Leadlay PF; Bolhuis H; Dijkhuizen L (2008). Actinomycete integrative and conjugative pMEA-like elements of Amycolatopsis and Saccharopolyspora decoded. Plasmid. 59(3):202-16. [PudMed:18295883] in_silico
(3) Oliynyk M; Samborskyy M; Lester JB; Mironenko T; Scott N; Dickens S; Haydock SF; Leadlay PF (2007). Complete genome sequence of the erythromycin-producing bacterium Saccharopolyspora erythraea NRRL23338. Nat Biotechnol. 25(4):447-53. [PudMed:17369815]
(4) Brown DP; Idler KB; Katz L (1990). Characterization of the genetic elements required for site-specific integration of plasmid pSE211 in Saccharopolyspora erythraea. J Bacteriol. 172(4):1877-88. [PudMed:2180909] experimental
(5) Katz L; Brown DP; Donadio S (1991). Site-specific recombination in Escherichia coli between the att sites of plasmid pSE211 from Saccharopolyspora erythraea. Mol Gen Genet. 227(1):155-9. [PudMed:2046656] experimental
 
experimental experimental literature
in_silico in silico analysis literature