ICEberg
ICEberg ID16
NameICEVchBan9
FamilySXT/R391
OrganismVibrio cholerae MJ-1236
Size (bp)107703
GC content [Genome] (%)48 [47]
Insertion siteprfC (VCD_003660)
FunctionAntibiotic resistance genes: floR, strBA, sul2, dfrA1, tetA; glyoxoylase abx resistance
Species that ICE can be transferred to-
Nucleotide SequenceCP001485 (complete ICE sequence in this genome)
Replicon chromosome 1 (3149584 bp, Project:33555) [NC_012668]
Genome coordinates2958347..3066049
Link to view genome context of this ICE in the genome browser
experimental This is a ICE derived from experimental literature.
Complete gene list of ICEVchBan9 form CP001485
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1VCD_0036572954522..2955799 [-], 1278229371390 branched-chain amino acid transport system carrier protein
2VCD_0036582956144..2956866 [+], 723229371391 predicted O-methyltransferase
3VCD_0036592956954..2958225 [+], 1272229371392 ATP-dependent RNA helicase SrmB
4VCD_0036602958347..2959936 [-], 1590229371393  [UniProt]  [KEGG]peptide chain release factor 3
5VCD_0036612960193..2960840 [-], 648229371394  [UniProt]  [KEGG]HTH-type transcriptional regulator for conjugative element SXT
6VCD_0036622960958..2961209 [+], 252229371395  [UniProt]  [KEGG]uncharacterized protein conserved in bacteria prophage-related
7VCD_0036632961265..2962134 [+], 870229371396  [UniProt]  [KEGG]hypothetical protein
8VCD_0036642962055..2962783 [+], 729229371397  [UniProt]  [KEGG]hypothetical protein
9VCD_0036652962770..2963318 [+], 549229371398  [UniProt]  [KEGG]soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
10VCD_0036662963315..2963614 [+], 300229371399  [UniProt]  [KEGG]hypothetical protein
11VCD_0036672964666..2968235 [-], 3570229371400  [UniProt]  [KEGG]IncF plasmid conjugative transfer protein TraG
12VCD_0036682968239..2969627 [-], 1389229371401  [UniProt]  [KEGG]IncF plasmid conjugative transfer pilus assembly protein TraH
13VCD_0036692969630..2970574 [-], 945229371402  [UniProt]  [KEGG]IncF plasmid conjugative transfer pilus assembly protein TraF
14VCD_0036702970831..2971790 [-], 960229371403  [UniProt]  [KEGG]integron integraseVF
15VCD_0036712972078..2972551 [+], 474229371404  [UniProt]  [KEGG]dihydrofolate reductaseAR
16VCD_0036722973754..2974122 [+], 369229371405  [UniProt]  [KEGG]hypothetical protein
17VCD_0036732974222..2974923 [+], 702229371406  [UniProt]  [KEGG]hypothetical protein
18VCD_0036742975596..2976303 [-], 708229371407  [UniProt]  [KEGG]hypothetical protein
19VCD_0036752976393..2977466 [-], 1074229371408  [UniProt]  [KEGG]hypothetical protein
20VCD_0036762977557..2977898 [-], 342229371409  [UniProt]  [KEGG]hypothetical protein
21VCD_0036772977898..2978395 [-], 498229371410  [UniProt]  [KEGG]DNA repair protein RadCVF
22VCD_0036782978480..2980135 [-], 1656229371411  [UniProt]  [KEGG]hypothetical protein
23VCD_0036792980205..2980645 [-], 441229371412  [UniProt]  [KEGG]hypothetical protein
24VCD_0036802980707..2981660 [-], 954229371413  [UniProt]  [KEGG]cobalamine biosynthesis protein
25VCD_0036812981759..2982529 [-], 771229371414  [UniProt]  [KEGG]hypothetical protein
26VCD_0036822982526..2983602 [-], 1077229371415  [UniProt]  [KEGG]ATPase associated with various cellular activities AAA_5
27VCD_0036832983695..2984711 [-], 1017229371416  [UniProt]  [KEGG]DNA recombination protein
28VCD_0036842984772..2984915 [-], 144229371417  [UniProt]  [KEGG]hypothetical protein
29VCD_0036852984997..2985815 [-], 819229371418  [UniProt]  [KEGG]hypothetical protein
30VCD_0036862985895..2986314 [-], 420229371419  [UniProt]  [KEGG]single-stranded DNA-binding proteinVF
31VCD_0036872986330..2986668 [-], 339229371420  [UniProt]  [KEGG]hypothetical protein
32VCD_0036882987024..2987626 [+], 603229371421  [UniProt]  [KEGG]hypothetical protein
33VCD_0036892987717..2988379 [-], 663229371422  [UniProt]  [KEGG]hypothetical protein
34VCD_0036902988410..2988883 [-], 474229371423  [UniProt]  [KEGG]hypothetical protein
35VCD_0036912988974..2992615 [-], 3642229371424  [UniProt]  [KEGG]IncF plasmid conjugative transfer protein TraN
36VCD_0036922992669..2993703 [-], 1035229371425  [UniProt]  [KEGG]IncF plasmid conjugative transfer pilus assembly protein TraU
37VCD_0036932993681..2994844 [-], 1164229371426  [UniProt]  [KEGG]hypothetical protein
38VCD_0036942994816..2995328 [-], 513229371427  [UniProt]  [KEGG]signal peptidase I
39VCD_0036952995312..2995659 [-], 348229371428  [UniProt]  [KEGG]hypothetical protein
40VCD_0036962995652..2998069 [-], 2418229371429  [UniProt]  [KEGG]IncF plasmid conjugative transfer pilus assembly protein TraC
41VCD_0036972998051..2998743 [-], 693229371430  [UniProt]  [KEGG]thiol:disulfide interchange protein DsbC
42VCD_0036982998888..3000333 [-], 1446229371431  [UniProt]  [KEGG]type 4 fimbriae expression regulatory protein pilR
43VCD_0036993000336..3001871 [-], 1536229371432  [UniProt]  [KEGG]hypothetical protein
44VCD_0037003001881..3002990 [-], 1110229371433  [UniProt]  [KEGG]hypothetical protein
45VCD_0037013002987..3005716 [-], 2730229371434  [UniProt]  [KEGG]hypothetical protein
46VCD_0037023006281..3007231 [-], 951229371435  [UniProt]  [KEGG]YncTA
47VCD_0037033007212..3008045 [-], 834229371436  [UniProt]  [KEGG]YndTA
48VCD_0037043008223..3008609 [-], 387229371437  [UniProt]  [KEGG]TraA
49VCD_0037053008606..3009256 [-], 651229371438  [UniProt]  [KEGG]conjugative transfer protein TraV
50VCD_0037063009253..3010545 [-], 1293229371439  [UniProt]  [KEGG]IncF plasmid conjugative transfer pilus assembly protein TraB
51VCD_0037073010542..3011444 [-], 903229371440  [UniProt]  [KEGG]IncF plasmid conjugative transfer pilus assembly protein TraK
52VCD_0037083011425..3012051 [-], 627229371441  [UniProt]  [KEGG]hypothetical protein
53VCD_0037093012048..3012335 [-], 288229371442  [UniProt]  [KEGG]IncF plasmid conjugative transfer pilus assembly protein TraL
54VCD_0037103012585..3013205 [+], 621229371443  [UniProt]  [KEGG]hypothetical protein
55VCD_0037113013232..3013876 [-], 645229371444  [UniProt]  [KEGG]conjugative transfer protein s043
56VCD_0037123013854..3014390 [-], 537229371445  [UniProt]  [KEGG]hypothetical protein
57VCD_0037133014424..3016244 [-], 1821229371446  [UniProt]  [KEGG]TraD
58VCD_0037143016293..3018443 [-], 2151229371447  [UniProt]  [KEGG]TraI
59VCD_0037153018598..3021249 [-], 2652229371448  [UniProt]  [KEGG]hypothetical protein
60VCD_0037163021293..3023368 [-], 2076229371449  [UniProt]  [KEGG]hypothetical protein
61VCD_0037173023385..3026042 [-], 2658229371450  [UniProt]  [KEGG]hypothetical protein
62VCD_0037183026042..3029668 [-], 3627229371451  [UniProt]  [KEGG]hypothetical protein
63VCD_0037193029684..3031447 [-], 1764229371452  [UniProt]  [KEGG]hypothetical protein
64VCD_0037203031464..3035141 [-], 3678229371453  [UniProt]  [KEGG]hypothetical protein
65VCD_0037213035160..3035753 [-], 594229371454  [UniProt]  [KEGG]hypothetical protein
66VCD_0037223035741..3036340 [-], 600229371455  [UniProt]  [KEGG]hypothetical protein
67VCD_0037233036350..3037276 [-], 927229371456  [UniProt]  [KEGG]hypothetical protein
68VCD_0037243037345..3037659 [-], 315229371457  [UniProt]  [KEGG]hypothetical protein
69VCD_0037253037747..3038652 [-], 906229371458  [UniProt]  [KEGG]DNA polymerase III epsilon subunit-like 3'-5' exonuclease
70VCD_0037263039291..3039740 [+], 450229371459  [UniProt]  [KEGG]error-prone repair protein UmuD
71VCD_0037273039709..3040017 [+], 309229371460  [UniProt]  [KEGG]error-prone repair protein UmuC
72VCD_0037283040602..3041801 [-], 1200229371461  [UniProt]  [KEGG]transposase
73VCD_0037293041840..3041947 [+], 108229371462  [UniProt]  [KEGG]hypothetical protein
74VCD_0037303042446..3043261 [+], 816229371463  [UniProt]  [KEGG]dihydropteroate synthaseAR
75VCD_0037313043322..3044125 [+], 804229371464  [UniProt]  [KEGG]aminoglycoside 3'-phosphotransferaseAR
76VCD_0037323044116..3044961 [+], 846229371465  [UniProt]  [KEGG]aminoglycoside/hydroxyurea antibiotic resistance kinaseAR
77VCD_0037333045239..3045385 [+], 147229371466  [UniProt]  [KEGG]hypothetical protein
78VCD_0037343045633..3046655 [-], 1023229371467  [UniProt]  [KEGG]cobalt-zinc-cadmium resistance protein czcD
79VCD_0037353046790..3047173 [-], 384229371468  [UniProt]  [KEGG]hypothetical protein
80VCD_0037363047352..3047546 [+], 195229371469  [UniProt]  [KEGG]StrA aminoglycoside phosphotransferaseAR
81VCD_0037373047684..3048361 [-], 678229371470  [UniProt]  [KEGG]tetracycline repressor proteinVF
82VCD_0037383048365..3049639 [+], 1275229371471  [UniProt]  [KEGG]TetAAR VF
83VCD_0037393049891..3050196 [-], 306229371472  [UniProt]  [KEGG]transcriptional regulator LysR family
84VCD_0037403050224..3051438 [-], 1215229371473  [UniProt]  [KEGG]florfenicol/chloramphenicol resistance proteinAR
85VCD_0037413051655..3052539 [-], 885229371474  [UniProt]  [KEGG]hypothetical proteinAR
86VCD_0037423052570..3054063 [-], 1494229371475  [UniProt]  [KEGG]IS phage Tn transposon-related protein
87VCD_0037433054481..3056619 [-], 2139229371476  [UniProt]  [KEGG]transposase Tn3 family protein
88VCD_0037443057324..3057431 [+], 108229371477  [UniProt]  [KEGG]hypothetical protein
89VCD_0037453058519..3059622 [+], 1104229371478  [UniProt]  [KEGG]error-prone repair protein UmuC
90VCD_0037463059633..3060076 [-], 444229371479  [UniProt]  [KEGG]hypothetical protein
91VCD_0037473060099..3060233 [-], 135229371480  [UniProt]  [KEGG]hypothetical protein
92VCD_0037483060541..3061515 [+], 975229371481  [UniProt]  [KEGG]Rod shape determination protein
93VCD_0037493061512..3061787 [+], 276229371482  [UniProt]  [KEGG]hypothetical protein
94VCD_0037503061789..3063030 [+], 1242229371483  [UniProt]  [KEGG]phage Integrase
95VCD_0037513063160..3065178 [-], 2019229371484  [UniProt]  [KEGG]hypothetical protein
96VCD_0037523065951..3066049 [-], 99229371485  [UniProt]  [KEGG]hypothetical protein
97VCD_0037533066253..3068310 [+], 2058229371486 C-di-GMP phosphodiesterase A-related protein
98VCD_0037543068299..3068772 [-], 474229371487 ribosomal-protein-S18p-alanine acetyltransferase
99VCD_0037553068745..3069152 [-], 408229371488 DNA polymerase III psi subunit
100VCD_0037563069263..3069814 [-], 552229371489 acetyltransferase
101VCD_0037573069750..3070181 [-], 432229371490 hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer
regulation Gene may play role in regulation of transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins93Fasta
(1) Palmieri C; Magi G; Creti R; Baldassarri L; Imperi M; Gherardi G; Facinelli B (2012). Interspecies mobilization of an erm(T)-carrying plasmid of Streptococcus dysgalactiae subsp. equisimilis by a coresident ICE of the ICESa2603 family. J Antimicrob Chemother. . [PudMed:22949621] experimental
(2) Spagnoletti M; Ceccarelli D; Colombo MM (2012). Rapid detection by multiplex PCR of Genomic Islands, prophages and Integrative Conjugative Elements in V. cholerae 7th pandemic variants. J Microbiol Methods. 88(1):98-102. [PudMed:22062086] experimental
(3) Wozniak RA; Fouts DE; Spagnoletti M; Colombo MM; Ceccarelli D; Garriss G; Dery C; Burrus V; Waldor MK (2009). Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs. PLoS Genet. 5(12):e1000786. [PudMed:20041216] in_silico
 
experimental experimental literature
in_silico in silico analysis literature