ICEberg
ICEberg
ICEberg ID165
NameICE6094
FamilyTn5253
OrganismStreptococcus pneumoniae Pn19
Size (bp)61030
GC content [Genome] (%)33.2
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceFR670347 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1..61030
Link to view genome context of this ICE in the genome browser
experimental This is a ICE derived from experimental literature.
Complete gene list of ICE6094 form FR670347
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1-1..1188 [-], 1188308238067  [UniProt] integrase
2-1160..1429 [-], 270308238068  [UniProt] hypothetical protein
3-1736..2023 [-], 288308238069  [UniProt] hypothetical protein
4-3477..4658 [-], 1182308238070  [UniProt] hypothetical protein
5-5609..7009 [-], 1401308238071  [UniProt] hypothetical protein
6-7030..8805 [-], 1776308238072  [UniProt] hypothetical protein
7-8915..9433 [-], 519308238073  [UniProt] hypothetical protein
8-11503..12303 [+], 801308238074  [UniProt] hypothetical protein
9-12860..14569 [-], 1710308238075  [UniProt] putative relaxase
10-14669..15034 [-], 366308238076  [UniProt] hypothetical protein
11-15039..15395 [-], 357308238077  [UniProt] hypothetical protein
12-15758..16933 [+], 1176308238078  [UniProt] hypothetical protein
13-17019..18836 [-], 1818319412009  [UniProt] ATP-dependent DNA helicase (UvrD)
14-18823..20892 [-], 2070319412010  [UniProt] DNA helicase associated protein
15-21565..22794 [+], 1230319412011  [UniProt] hypothetical protein
16-22791..23363 [-], 573319412012  [UniProt] hypothetical protein
17-23457..24353 [+], 897319412013  [UniProt] hypothetical protein
18-25374..25838 [-], 465319412014  [UniProt] hypothetical proteinTA
19-26126..26602 [-], 477319412015  [UniProt] hypothetical proteinTA
20-26878..27522 [-], 645319412016  [UniProt] hypothetical protein
21-27601..28200 [-], 600319412017  [UniProt] hypothetical protein
22-28623..29558 [+], 936319412018  [UniProt] replication protein
23-30423..31073 [-], 651319412019  [UniProt] chloramphenicol acetyltransferaseAR
24-31245..31493 [-], 249319412020  [UniProt] hypothetical protein
25-31732..32520 [-], 789319412021  [UniProt] hypothetical protein
26-32996..33754 [-], 759319412022  [UniProt] zeta toxinTA
27-33754..34230 [-], 477319412023  [UniProt] putative transcriptional regulatorTA
28-34298..34570 [-], 273319412024  [UniProt] hypothetical protein
29-34608..34991 [-], 384319412025  [UniProt] hypothetical protein
30-34988..35221 [-], 234319412026  [UniProt] hypothetical protein
31-35272..36357 [-], 1086319412027  [UniProt] hypothetical protein
32-36367..37008 [-], 642319412028  [UniProt] hypothetical protein
33-38024..44248 [-], 6225319412029  [UniProt] SNF2 family protein
34-44296..44706 [-], 411319412030  [UniProt] hypothetical protein
35-45333..45941 [+], 609319412031  [UniProt] hypothetical protein
36-45976..48789 [-], 2814319412032  [UniProt] putative conjugal transfer protein
37-48801..51158 [-], 2358319412033  [UniProt] putative conjugal transfer protein
38-51109..51468 [-], 360319412034  [UniProt] hypothetical protein
39-51522..52376 [-], 855319412035  [UniProt] hypothetical protein
40-52656..54536 [-], 1881319412036  [UniProt] TraG/TraD family protein
41-54533..55021 [-], 489319412037  [UniProt] hypothetical protein
42-55011..55310 [-], 300319412038  [UniProt] hypothetical protein
43-55593..56429 [-], 837319412039  [UniProt] hypothetical protein
44-56429..57019 [-], 591319412040  [UniProt] hypothetical protein
45-57150..57737 [-], 588319412041  [UniProt] hypothetical protein
46-57740..57973 [-], 234319412042  [UniProt] hypothetical protein
47-57986..58366 [-], 381319412043  [UniProt] hypothetical protein
48-58359..58808 [-], 450319412044  [UniProt] hypothetical protein
49-58792..60150 [-], 1359319412045  [UniProt] C-5-cytosine-specific DNA methylase
50-60251..61030 [-], 780319412046  [UniProt] putative replication protein A (RepA)
 
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins50Fasta
(1) Mingoia M; Tili E; Manso E; Varaldo PE; Montanari MP (2011). Heterogeneity of Tn5253-like composite elements in clinical Streptococcus pneumoniae isolates. Antimicrob Agents Chemother. 55(4):1453-9. [PudMed:21263055] experimental
 
experimental experimental literature