ICEberg
ICEberg ID166
NameICE-KKS
FamilyTn4371
OrganismAcidovorax sp. KKS102
Size (bp)61807
GC content [Genome] (%)64
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAB546270 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1..61807
Link to view genome context of this ICE in the genome browser
experimental This is a ICE derived from experimental literature.
Complete gene list of ICE-KKS form AB546270
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1-186..1388 [+], 1203321116506  [UniProt] integrase
2-1528..1911 [+], 384321116507  [UniProt] hypothetical proteinTA
3-1895..2197 [+], 303321116508  [UniProt] hypothetical proteinTA
4-2286..2753 [+], 468321116509  [UniProt] hypothetical protein
5-2753..3379 [+], 627321116510  [UniProt] hypothetical protein
6-3383..4519 [+], 1137321116511  [UniProt] hypothetical protein
7-4516..5178 [+], 663321116512  [UniProt] hypothetical protein
8-5195..5680 [-], 486321116513  [UniProt] hypothetical protein
9-5722..6309 [-], 588321116514  [UniProt] hypothetical protein
10-6313..7455 [-], 1143321116515  [UniProt] hypothetical protein
11radC7868..8374 [+], 507321116516  [UniProt] DNA repair protein RadCVF
12-8656..9006 [+], 351321116517  [UniProt] hypothetical protein
13-9037..9816 [-], 780321116518  [UniProt] hypothetical protein
14gene3210233..11057 [+], 825321116519  [UniProt] putative F plasmid gene 32-like proteinVF
15parB11136..13196 [+], 2061321116520  [UniProt] ParB family protein
16-13404..13934 [-], 531321116521  [UniProt] hypothetical protein
17-14017..15168 [-], 1152321116522  [UniProt] chromate transporter
18arsC15566..15988 [-], 423321116523  [UniProt] arsenate reductase
19-16006..17091 [-], 1086321116524  [UniProt] arsenite transporter
20-17102..17599 [-], 498321116525  [UniProt] hypothetical protein
21-17612..18082 [-], 471321116526  [UniProt] Glyoxalase/bleomycin resistance protein
22-18096..18443 [-], 348321116527  [UniProt] ArsR family transcriptional regulator
23-18516..18875 [+], 360321116528  [UniProt] hypothetical protein
24-19172..19525 [+], 354321116529  [UniProt] hypothetical protein
25-19591..19896 [-], 306321116530  [UniProt] XRE family transcriptional regulator
26-20137..20487 [+], 351321116531  [UniProt] Putative lipoprotein
27-20867..21571 [+], 705321116532  [UniProt] hypothetical protein
28xis21656..21937 [+], 282321116533  [UniProt] excisionase
29rep21964..22821 [+], 858321116534  [UniProt] plasmid replication protein
30parA23075..23713 [+], 639321116535  [UniProt] plasmid partitioning protein
31-23710..23994 [+], 285321116536  [UniProt] hypothetical protein
32-23991..24524 [+], 534321116537  [UniProt] hypothetical protein
33traF24521..25117 [+], 597321116538  [UniProt] conjugal transfer protein TraF
34traI25452..27551 [+], 2100321116539  [UniProt] relaxase
35bphS27659..28423 [-], 765321116540  [UniProt] GntR family transcriptional regulator
36tnp28778..29743 [-], 966321116541  [UniProt] transposase
37bphE30255..31061 [+], 807321116542  [UniProt] 2-hydroxypent-2,4-dienoate hydratase
38bphG31064..32014 [+], 951321116543  [UniProt] acetaldehyde dehydrogenase
39bphF32025..33083 [+], 1059321116544  [UniProt] 4-hydroxy-2-oxovalerate aldolase
40bphV33102..33512 [+], 411321116545  [UniProt] putative membrane protein
41bphA133572..34948 [+], 1377321116546  [UniProt] biphenyl dioxygenase alpha subunit
42bphA235119..35700 [+], 582321116547  [UniProt] biphenyl dioxygenase beta subunit
43bphA335718..36047 [+], 330321116548  [UniProt] biphenyl dioxygenase ferredoxin subunit
44bphB36066..36896 [+], 831321116549  [UniProt] cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
45bphC36911..37792 [+], 882321116550  [UniProt] dihydroxybiphenyl dioxygenase
46bphD37829..38689 [+], 861321116551  [UniProt] 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid hydrolase
47bphW38817..39473 [+], 657321116552  [UniProt] putative outer membrane protein
48bphA439638..40864 [+], 1227321116553  [UniProt] biphenyl dioxygenase ferredoxin reductase subunit
49traR41158..42102 [+], 945321116554  [UniProt] LysR family transcriptional regulator
50traG42613..44640 [+], 2028321116555  [UniProt] conjugal transfer coupling protein TraG
51-44637..45113 [+], 477321116556  [UniProt] hypothetical protein
52trbB45110..46177 [+], 1068321116557  [UniProt] conjugal transfer protein TrbB
53trbC46174..46557 [+], 384321116558  [UniProt] conjugal transfer protein TrbC
54trbD46554..46826 [+], 273321116559  [UniProt] conjugal transfer protein TrbD
55trbE46842..49295 [+], 2454321116560  [UniProt] conjugal transfer protein TrbE
56trbJ49292..50017 [+], 726321116561  [UniProt] conjugal transfer protein TrbJ
57-50030..50350 [+], 321321116562  [UniProt] lipoprotein
58trbL50347..51732 [+], 1386321116563  [UniProt] conjugal transfer protein TrbL
59trbF51745..52449 [+], 705321116564  [UniProt] conjugal transfer protein TrbF
60trbG52446..53429 [+], 984321116565  [UniProt] conjugal transfer protein TrbG
61trbI53432..54718 [+], 1287321116566  [UniProt] conjugal transfer protein TrbI
62-54715..54933 [+], 219321116567  [UniProt] hypothetical protein
63-55918..58254 [+], 2337321116568  [UniProt] hypothetical protein
64-58251..60128 [+], 1878321116569  [UniProt] DNA helicase
65tnp60283..61230 [+], 948321116570  [UniProt] transposase
 
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins65Fasta
(1) Ohtsubo Y; Ishibashi Y; Naganawa H; Hirokawa S; Atobe S; Nagata Y; Tsuda M (2012). Conjugal transfer of polychlorinated biphenyl/biphenyl degradation genes in Acidovorax sp. strain KKS102, which are located on an integrative and conjugative element. J Bacteriol. 194(16):4237-48. [PudMed:22685277] experimental
(2) Ohtsubo Y; Goto H; Nagata Y; Kudo T; Tsuda M (2006). Identification of a response regulator gene for catabolite control from a PCB-degrading beta-proteobacteria, Acidovorax sp. KKS102. Mol Microbiol. 60(6):1563-75. [PudMed:16796688] experimental
(3) Ohtsubo Y; Delawary M; Kimbara K; Takagi M; Ohta A; Nagata Y (2001). BphS, a key transcriptional regulator of bph genes involved in polychlorinated biphenyl/biphenyl degradation in Pseudomonas sp. KKS102. J Biol Chem. 276(39):36146-54. [PudMed:11459836] experimental
 
experimental experimental literature