ICEberg
ICEberg ID188
Name370-RD.1
Family10270-RD.1
OrganismBradyrhizobium japonicum USDA 110
Size (bp)9782
GC content [Genome] (%)33 [38]
Insertion site-
FunctionSrtA required for cell wall anchoring of protein A as well as virulence
Species that ICE can be transferred to-
Nucleotide SequenceAE004092 (complete ICE sequence in this genome)
Replicon chromosome (1852441 bp, Project:269) [NC_002737]
Genome coordinates884024..893806
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of 370-RD.1 form AE004092
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1SPy_1070879378..880787 [+], 141013622216 putative dipeptidase
2thdF880855..882231 [-], 137713622217 putative thiophene degradation protein F
3rplJ882564..883064 [+], 50113622218 50S ribosomal protein L10
4rplL883129..883494 [+], 36613622219 50S ribosomal protein L7/L12
5SPy_1075884024..884392 [+], 36913622221  [UniProt] conserved hypothetical protein
6SPy_1077884567..884890 [+], 32413622222  [UniProt] putative methyl transferase
7srtI885728..886375 [+], 64813622223  [UniProt]  [KEGG]protein involved in lantibiotic (srt) production
8srtR886526..887212 [+], 68713622224  [UniProt] putative DNA binding regulatory protein - lantibiotic associated
9srtK887205..888551 [+], 134713622225  [UniProt]  [KEGG]putative histidine kinase - lantibiotic associated
10srtA888699..888839 [+], 14113622226  [UniProt]  [KEGG]lantibiotic precursor
11srtT888954..889571 [+], 61813622227  [UniProt] ABC transporter (ATP binding) - lantibiotic associated
12srtF889653..890342 [+], 69013622228  [UniProt]  [KEGG]ABC transporter (ATP-binding) - lantibiotic associated
13srtE890348..891097 [+], 75013622229  [UniProt] conserved hypothetical protein - lantibiotic associated
14srtG891100..891822 [+], 72313622230  [UniProt] conserved hypothetical protein - lantibiotics associated
15SPy_1088892014..892232 [+], 21913622231  [UniProt] putative repressor protein - phage associated
16SPy_1093894068..895303 [+], 123613622233 putative D,D-carboxypeptidase, penicillin-binding protein
17SPy_1094895420..896382 [-], 96313622234 conserved hypothetical protein
18folC.1896714..897991 [+], 127813622235 putative folyl-polyglutamate synthetase
19folE898002..898604 [+], 60313622236 GTP cyclohydrolase
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins11Fasta
(1) Beres SB; Musser JM (2007). Contribution of exogenous genetic elements to the group A Streptococcus metagenome. PLoS One. 2(8):e800. [PudMed:17726530]