ICEberg
ICEberg ID192
NameICE(Tn4371)6033
FamilyTn4371
OrganismRalstonia pickettii 12J
Size (bp)54121
GC content [Genome] (%)64.63 [63]
Insertion siteTTTTTCAT
Functionbeta-lactamase
Species that ICE can be transferred to-
Nucleotide SequenceCP001068 (complete ICE sequence in this genome)
Replicon chromosome 1 (3942557 bp, Project:17631) [NC_010682]
Genome coordinates2715199..2769318
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of ICE(Tn4371)6033 form CP001068
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1Rpic_25972711130..2712917 [-], 1788187726559 surface antigen (D15)
2Rpic_25982713155..2713343 [+], 189187726560 conserved hypothetical protein
3Rpic_25992713383..2714264 [+], 882187726561 chromosome segregation and condensation protein ScpA
4Rpic_26002714303..2715154 [+], 852187726562 pantoate/beta-alanine ligase
5Rpic_26012715382..2716581 [+], 1200187726563  [UniProt]  [KEGG]integrase family protein
6Rpic_26022716578..2717714 [+], 1137187726564  [UniProt]  [KEGG]protein of unknown function DUF1016
7Rpic_26032717760..2718548 [-], 789187726565  [UniProt]  [KEGG]conserved hypothetical protein
8Rpic_26042718555..2719457 [-], 903187726566  [UniProt]  [KEGG]conserved hypothetical protein
9Rpic_26052719547..2720740 [+], 1194187726567  [UniProt]  [KEGG]conserved hypothetical protein
10Rpic_26062720737..2722992 [+], 2256187726568  [UniProt]  [KEGG]UBA/THIF-type NAD/FAD binding protein
11Rpic_26072723038..2724108 [+], 1071187726569  [UniProt]  [KEGG]conserved hypothetical protein
12Rpic_26082724485..2724835 [+], 351187726570  [UniProt]  [KEGG]conserved hypothetical protein
13Rpic_26092724899..2725177 [+], 279187726571  [UniProt]  [KEGG]conserved hypothetical protein
14Rpic_26102725320..2725619 [-], 300187726572  [UniProt]  [KEGG]conserved hypothetical protein
15Rpic_26112726555..2727379 [+], 825187726573  [UniProt]  [KEGG]protein of unknown function DUF932VF
16Rpic_26122727445..2729484 [+], 2040187726574  [UniProt]  [KEGG]ParB domain protein nuclease
17Rpic_26132729547..2729756 [+], 210187726575  [UniProt]  [KEGG]conserved hypothetical protein
18Rpic_26142729973..2730434 [+], 462187726576  [UniProt]  [KEGG]conserved hypothetical protein
19Rpic_26152731222..2731536 [+], 315187726577  [UniProt]  [KEGG]protein of unknown function DUF736
20Rpic_26162731902..2732195 [-], 294187726578  [UniProt]  [KEGG]helix-turn-helix domain protein
21Rpic_26172732419..2732766 [+], 348187726579  [UniProt]  [KEGG]putative lipoprotein
22Rpic_26182733108..2733857 [+], 750187726580  [UniProt]  [KEGG]conserved hypothetical protein
23Rpic_26192733941..2734222 [+], 282187726581  [UniProt]  [KEGG]conserved hypothetical protein
24Rpic_26202734249..2735097 [+], 849187726582  [UniProt]  [KEGG]conserved hypothetical replication initiator and transcription repressor protein
25Rpic_26212735351..2735989 [+], 639187726583  [UniProt]  [KEGG]Cobyrinic acid ac-diamide synthase
26Rpic_26222735986..2736249 [+], 264187726584  [UniProt]  [KEGG]conserved hypothetical protein
27Rpic_26232736246..2736779 [+], 534187726585  [UniProt]  [KEGG]conserved hypothetical protein
28Rpic_26242736776..2737363 [+], 588187726586  [UniProt]  [KEGG]putative conjugal transfer TRAF transmembrane protein
29Rpic_26252737800..2739782 [+], 1983187726587  [UniProt]  [KEGG]conserved hypothetical protein
30Rpic_26272740659..2741441 [-], 783187726588  [UniProt]  [KEGG]short-chain dehydrogenase/reductase SDR
31Rpic_26282741476..2742261 [-], 786187726589  [UniProt]  [KEGG]Enoyl-CoA hydratase/isomerase
32Rpic_26292742273..2743454 [-], 1182187726590  [UniProt]  [KEGG]acetyl-CoA acetyltransferase
33Rpic_26302743483..2745159 [-], 1677187726591  [UniProt]  [KEGG]AMP-dependent synthetase and ligase
34Rpic_26312745171..2746220 [-], 1050187726592  [UniProt]  [KEGG]L-carnitine dehydratase/bile acid-inducible protein F
35Rpic_26322746223..2747368 [-], 1146187726593  [UniProt]  [KEGG]acyl-CoA dehydrogenase domain protein
36Rpic_26332747563..2748591 [+], 1029187726594  [UniProt]  [KEGG]transcriptional regulator, AraC family
37Rpic_26342748564..2748671 [-], 108187726595  [UniProt]  [KEGG]hypothetical protein
38Rpic_26352748939..2749988 [+], 1050187726596  [UniProt]  [KEGG]beta-lactamase domain protein
39Rpic_26362750177..2750455 [-], 279187726597  [UniProt]  [KEGG]transposase family protein
40Rpic_26372750723..2752090 [+], 1368187726598  [UniProt]  [KEGG]major facilitator superfamily MFS_1
41Rpic_26382752115..2753896 [+], 1782187726599  [UniProt]  [KEGG]acyl-CoA dehydrogenase domain protein
42Rpic_26392753921..2754670 [+], 750187726600  [UniProt]  [KEGG]Electron transfer flavoprotein alpha/beta-subunit
43Rpic_26402754671..2755603 [+], 933187726601  [UniProt]  [KEGG]Electron transfer flavoprotein alpha subunit
44Rpic_26412755621..2756535 [+], 915187726602  [UniProt]  [KEGG]transcriptional regulator, LysR family
45Rpic_26422756561..2756791 [+], 231187726603  [UniProt]  [KEGG]conserved hypothetical protein
46Rpic_26432757009..2759027 [+], 2019187726604  [UniProt]  [KEGG]TRAG family protein
47Rpic_26442759024..2759488 [+], 465187726605  [UniProt]  [KEGG]CopG domain protein DNA-binding domain protein
48Rpic_26452759485..2760522 [+], 1038187726606  [UniProt]  [KEGG]P-type conjugative transfer ATPase TrbB
49Rpic_26462760519..2760911 [+], 393187726607  [UniProt]  [KEGG]Conjugal transfer protein TrbC
50Rpic_26472760908..2761192 [+], 285187726608  [UniProt]  [KEGG]putative conjugal transfer TrbD transmembrane protein
51Rpic_26482761212..2763689 [+], 2478187726609  [UniProt]  [KEGG]AAA ATPase
52Rpic_26492763686..2764441 [+], 756187726610  [UniProt]  [KEGG]P-type conjugative transfer protein TrbJ
53Rpic_26502764454..2765806 [+], 1353187726611  [UniProt]  [KEGG]P-type conjugative transfer protein TrbL
54Rpic_26512765825..2766529 [+], 705187726612  [UniProt]  [KEGG]Conjugal transfer protein
55Rpic_26522766526..2767521 [+], 996187726613  [UniProt]  [KEGG]P-type conjugative transfer protein TrbG
56Rpic_26532767524..2768795 [+], 1272187726614  [UniProt]  [KEGG]conjugation TrbI family protein
57Rpic_26542768792..2769037 [+], 246187726615  [UniProt]  [KEGG]conserved hypothetical protein
58Rpic_26552769315..2769980 [-], 666187726616 putative partition-related protein
59Rpic_26562770055..2771551 [-], 1497187726617 cobyric acid synthase CobQ
60Rpic_26572771613..2772188 [+], 576187726618 Adenosylcobinamide-phosphate guanylyltransferase
61Rpic_26582772185..2773165 [+], 981187726619 cobalamin biosynthesis protein CobD
62Rpic_26592773162..2774169 [+], 1008187726620 L-threonine-O-3-phosphate decarboxylase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins53Fasta
(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 9:242. [PudMed:19941653] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature