ICEberg
ICEberg ID193
NameICE(Tn4371)6034
FamilyTn4371
OrganismShewanella sp. ANA-3
Size (bp)45233
GC content [Genome] (%)59.43 [48]
Insertion siteTTTTTTAT
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP000469 (complete ICE sequence in this genome)
Replicon chromosome 1 (4972204 bp, Project:13905) [NC_008577]
Genome coordinates1458447..1503679
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of ICE(Tn4371)6034 form CP000469
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1Shewana3_12411455552..1457108 [+], 1557117612022 cytochrome bd ubiquinol oxidase, subunit I
2Shewana3_12421457124..1458263 [+], 1140117612023 cytochrome d ubiquinol oxidase, subunit II
3Shewana3_12431458282..1458398 [+], 117117612024 cyd operon protein YbgT
4Shewana3_12441458630..1459829 [+], 1200117612025  [UniProt]  [KEGG]phage integrase family protein
5Shewana3_12451459990..1460373 [+], 384117612026  [UniProt]  [KEGG]protein of unknown function DUF1044TA
6Shewana3_12461460354..1460659 [+], 306117612027  [UniProt]  [KEGG]transcriptional regulator-like proteinTA
7Shewana3_12471460685..1461503 [+], 819117612028  [UniProt]  [KEGG]conserved hypothetical protein
8Shewana3_12481461517..1462800 [+], 1284117612029  [UniProt]  [KEGG]hypothetical protein
9Shewana3_12491462966..1463565 [-], 600117612030  [UniProt]  [KEGG]ATPase-like protein
10Shewana3_12501463938..1465479 [+], 1542117612031  [UniProt]  [KEGG]Integrase, catalytic region
11Shewana3_12511465494..1466249 [+], 756117612032  [UniProt]  [KEGG]IstB domain protein ATP-binding protein
12Shewana3_12521466554..1467063 [+], 510117612033  [UniProt]  [KEGG]DNA repair protein RadCVF
13Shewana3_12531467107..1467916 [-], 810117612034  [UniProt]  [KEGG]hypothetical protein
14Shewana3_12541468067..1471351 [-], 3285117612035  [UniProt]  [KEGG]DNA helicase related protein
15Shewana3_12551471427..1473172 [-], 1746117612036  [UniProt]  [KEGG]hypothetical protein
16Shewana3_12561473237..1474130 [-], 894117612037  [UniProt]  [KEGG]hypothetical protein
17Shewana3_12571474143..1475105 [-], 963117612038  [UniProt]  [KEGG]Patatin
18Shewana3_12581475102..1475392 [-], 291117612039  [UniProt]  [KEGG]transcriptional regulator, XRE family
19Shewana3_12591475678..1476007 [+], 330117612040  [UniProt]  [KEGG]putative lipoprotein
20Shewana3_12611476330..1477127 [+], 798117612041  [UniProt]  [KEGG]conserved hypothetical protein
21Shewana3_12621477211..1477495 [+], 285117612042  [UniProt]  [KEGG]conserved hypothetical protein
22Shewana3_12631477522..1478379 [+], 858117612043  [UniProt]  [KEGG]conserved hypothetical replication initiator and transcription repressor protein
23Shewana3_12641478666..1479304 [+], 639117612044  [UniProt]  [KEGG]Cobyrinic acid a,c-diamide synthase
24Shewana3_12651479301..1479552 [+], 252117612045  [UniProt]  [KEGG]conserved hypothetical protein
25Shewana3_12661479549..1480082 [+], 534117612046  [UniProt]  [KEGG]conserved hypothetical protein
26Shewana3_12671480079..1480666 [+], 588117612047  [UniProt]  [KEGG]TraF peptidase. Serine peptidase. MEROPS family S26C
27Shewana3_12681481079..1483052 [+], 1974117612048  [UniProt]  [KEGG]conserved hypothetical protein
28Shewana3_12691483049..1483843 [-], 795117612049  [UniProt]  [KEGG]transcriptional regulator, XRE family
29Shewana3_12701483912..1485396 [+], 1485117612050  [UniProt]  [KEGG]major facilitator superfamily MFS_1
30Shewana3_12711485411..1485686 [+], 276117612051  [UniProt]  [KEGG]transcriptional regulator, LysR family
31Shewana3_12721485693..1485914 [+], 222117612052  [UniProt]  [KEGG]hypothetical protein
32Shewana3_12731485995..1486189 [+], 195117612053  [UniProt]  [KEGG]Smp-30/Cgr1 family protein
33Shewana3_12741486226..1486606 [+], 381117612054  [UniProt]  [KEGG]Smp-30/Cgr1 family protein
34Shewana3_12751486964..1487641 [+], 678117612055  [UniProt]  [KEGG]transcriptional regulator, IclR family
35Shewana3_12761487726..1488133 [+], 408117612056  [UniProt]  [KEGG]protein of unknown function DUF336
36Shewana3_12771488130..1489353 [+], 1224117612057  [UniProt]  [KEGG]major facilitator superfamily MFS_1
37Shewana3_12781489643..1490584 [+], 942117612058  [UniProt]  [KEGG]transcriptional regulator, LysR family
38Shewana3_12791490581..1490844 [+], 264117612059  [UniProt]  [KEGG]putative lipoprotein
39Shewana3_12801491078..1493075 [+], 1998117612060  [UniProt]  [KEGG]TRAG family protein
40Shewana3_12811493072..1493536 [+], 465117612061  [UniProt]  [KEGG]CopG domain protein DNA-binding domain protein
41Shewana3_12821493533..1494603 [+], 1071117612062  [UniProt]  [KEGG]type II secretion system protein E
42Shewana3_12831494600..1494986 [+], 387117612063  [UniProt]  [KEGG]Conjugal transfer protein TrbC
43Shewana3_12841494983..1495252 [+], 270117612064  [UniProt]  [KEGG]putative conjugal transfer trbD transmembrane protein
44Shewana3_12851495263..1497713 [+], 2451117612065  [UniProt]  [KEGG]AAA ATPase
45Shewana3_12861497710..1498453 [+], 744117612066  [UniProt]  [KEGG]putative conjugal transfer TrbJ signal peptide protein
46Shewana3_12871498466..1498783 [+], 318117612067  [UniProt]  [KEGG]putative lipoprotein
47Shewana3_12881498780..1500162 [+], 1383117612068  [UniProt]  [KEGG]TrbL/VirB6 plasmid conjugal transfer protein
48Shewana3_12891500181..1500885 [+], 705117612069  [UniProt]  [KEGG]Conjugal transfer protein
49Shewana3_12901500882..1501874 [+], 993117612070  [UniProt]  [KEGG]Conjugal transfer protein TrbG/VirB9/CagX
50Shewana3_12911501877..1503157 [+], 1281117612071  [UniProt]  [KEGG]conjugation TrbI family protein
51Shewana3_12921503154..1503399 [+], 246117612072  [UniProt]  [KEGG]conserved hypothetical protein
52Shewana3_12931504135..1506138 [-], 2004117612073 methyl-accepting chemotaxis sensory transducer
53Shewana3_12941506398..1506643 [+], 246117612074 protein of unknown function DUF465
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins48Fasta
(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 9:242. [PudMed:19941653] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature