ICEberg
ICEberg ID195
NameICE(Tn4371)6036
FamilyTn4371
OrganismAcidovorax citrulli AAC00-1
Size (bp)59844
GC content [Genome] (%)63.12 [68]
Insertion siteTTTTTCAT
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP000512 (complete ICE sequence in this genome)
Replicon chromosome (5352772 bp, Project:15708) [NC_008752]
Genome coordinates730667..790510
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of ICE(Tn4371)6036 form CP000512
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1Aave_0668729135..729524 [-], 390120587831 Glyoxalase/bleomycin resistance protein/dioxygenase
2Aave_0669729805..730401 [+], 597120587832 Hemerythrin HHE cation binding domain protein
3Aave_0671730850..732055 [+], 1206120587833  [UniProt]  [KEGG]phage integrase family protein
4Aave_0672732052..733077 [+], 1026120587834  [UniProt]  [KEGG]protein of unknown function DUF1016
5Aave_0673733147..734094 [+], 948120587835  [UniProt]  [KEGG]Integrase, catalytic region
6Aave_0675734279..736078 [-], 1800120587836  [UniProt]  [KEGG]UvrD/REP helicase
7Aave_0676736081..738219 [-], 2139120587837  [UniProt]  [KEGG]conserved hypothetical protein
8Aave_0677738663..739013 [+], 351120587838  [UniProt]  [KEGG]conserved hypothetical protein
9Aave_0678739153..739419 [+], 267120587839  [UniProt]  [KEGG]hypothetical protein
10Aave_0679739965..740789 [+], 825120587840  [UniProt]  [KEGG]protein of unknown function DUF932VF
11Aave_0680740868..742913 [+], 2046120587841  [UniProt]  [KEGG]ParB domain protein nuclease
12Aave_0681743673..743987 [+], 315120587842  [UniProt]  [KEGG]protein of unknown function DUF736
13Aave_0682744058..744351 [-], 294120587843  [UniProt]  [KEGG]transcriptional regulator, XRE family
14Aave_0683744541..745023 [+], 483120587844  [UniProt]  [KEGG]putative lipoprotein
15Aave_0684745368..746138 [+], 771120587845  [UniProt]  [KEGG]conserved hypothetical protein
16Aave_0685746250..746525 [+], 276120587846  [UniProt]  [KEGG]conserved hypothetical protein
17Aave_0686746552..747397 [+], 846120587847  [UniProt]  [KEGG]conserved hypothetical replication initiator and transcription repressor protein
18Aave_0687747663..748301 [+], 639120587848  [UniProt]  [KEGG]plasmid segregation oscillating ATPase ParF
19Aave_0688748298..748582 [+], 285120587849  [UniProt]  [KEGG]plasmid segregation centromere-binding protein ParG
20Aave_0689748579..749124 [+], 546120587850  [UniProt]  [KEGG]conserved hypothetical protein
21Aave_0690749121..749732 [+], 612120587851  [UniProt]  [KEGG]conjugation peptidase TraF
22Aave_0691750181..752169 [+], 1989120587852  [UniProt]  [KEGG]conserved hypothetical protein
23Aave_0692752223..752546 [+], 324120587853  [UniProt]  [KEGG]transposase IS3/IS911 family protein
24Aave_0693752579..753436 [+], 858120587854  [UniProt]  [KEGG]Integrase, catalytic regionVF
25Aave_0694753590..754684 [-], 1095120587855  [UniProt]  [KEGG]Integrase, catalytic region
26Aave_0695754681..755154 [-], 474120587856  [UniProt]  [KEGG]transposition helper protein
27Aave_0696755815..756645 [-], 831120587857  [UniProt]  [KEGG]transcriptional regulator, AraC family
28Aave_0697756702..757733 [+], 1032120587858  [UniProt]  [KEGG]1-aminocyclopropane-1-carboxylate deaminase
29Aave_0698757777..758739 [-], 963120587859  [UniProt]  [KEGG]transcriptional regulator, LysR family
30Aave_0699758852..759568 [+], 717120587860  [UniProt]  [KEGG](Acyl-carrier-protein) phosphodiesterase
31Aave_0700759871..761055 [+], 1185120587861  [UniProt]  [KEGG]major facilitator superfamily MFS_1
32Aave_0701761255..761572 [+], 318120587862  [UniProt]  [KEGG]hypothetical protein
33Aave_0702761576..762433 [-], 858120587863  [UniProt]  [KEGG]Integrase, catalytic regionVF
34Aave_0703762466..762789 [-], 324120587864  [UniProt]  [KEGG]transposase IS3/IS911 family protein
35Aave_0704762900..763748 [+], 849120587865  [UniProt]  [KEGG]integral membrane protein
36Aave_0705763843..764166 [+], 324120587866  [UniProt]  [KEGG]transposase IS3/IS911 family protein
37Aave_0706764199..765056 [+], 858120587867  [UniProt]  [KEGG]Integrase, catalytic regionVF
38Aave_0708765456..766313 [-], 858120587868  [UniProt]  [KEGG]Integrase, catalytic regionVF
39Aave_0709766346..766669 [-], 324120587869  [UniProt]  [KEGG]transposase IS3/IS911 family protein
40Aave_0710766720..767448 [-], 729120587870  [UniProt]  [KEGG]transposase IS66
41Aave_0711767563..767895 [-], 333120587871  [UniProt]  [KEGG]IS66 Orf2 family protein
42Aave_0712767892..768236 [-], 345120587872  [UniProt]  [KEGG]transposase IS3/IS911 family protein
43Aave_0713768815..769420 [+], 606120587873  [UniProt]  [KEGG]NAD(P)H dehydrogenase (quinone)
44Aave_0714769478..770053 [+], 576120587874  [UniProt]  [KEGG]GCN5-related N-acetyltransferase
45Aave_0715770050..770898 [+], 849120587875  [UniProt]  [KEGG]aldo/keto reductase
46Aave_0716771189..772073 [-], 885120587876  [UniProt]  [KEGG]transcriptional regulator, LysR family
47Aave_0717772288..773820 [+], 1533120587877  [UniProt]  [KEGG]major facilitator superfamily MFS_1
48Aave_0718773839..774210 [+], 372120587878  [UniProt]  [KEGG]small multidrug resistance protein
49Aave_0719774530..775003 [+], 474120587879  [UniProt]  [KEGG]transposition helper protein
50Aave_0720775000..776094 [+], 1095120587880  [UniProt]  [KEGG]Integrase, catalytic region
51Aave_0721776117..776359 [+], 243120587881  [UniProt]  [KEGG]small multidrug resistance protein
52Aave_0722776423..777367 [+], 945120587882  [UniProt]  [KEGG]transcriptional regulator, LysR familyVF
53Aave_0723777364..777630 [+], 267120587883  [UniProt]  [KEGG]putative lipoprotein
54Aave_0724777866..779872 [+], 2007120587884  [UniProt]  [KEGG]TRAG family protein
55Aave_0725779869..780345 [+], 477120587885  [UniProt]  [KEGG]CopG domain protein DNA-binding domain protein
56Aave_0726780342..781391 [+], 1050120587886  [UniProt]  [KEGG]type II secretion system protein E
57Aave_0727781388..781774 [+], 387120587887  [UniProt]  [KEGG]Conjugal transfer protein TrbC
58Aave_0728781771..782040 [+], 270120587888  [UniProt]  [KEGG]putative conjugal transfer TrbD transmembrane protein
59Aave_0729782053..784503 [+], 2451120587889  [UniProt]  [KEGG]AAA ATPase
60Aave_0730784500..785243 [+], 744120587890  [UniProt]  [KEGG]putative conjugal transfer TrbJ signal peptide protein
61Aave_0731785256..785570 [+], 315120587891  [UniProt]  [KEGG]putative lipoprotein
62Aave_0732785567..786958 [+], 1392120587892  [UniProt]  [KEGG]TrbL/VirB6 plasmid conjugal transfer protein
63Aave_0733786988..787692 [+], 705120587893  [UniProt]  [KEGG]Conjugal transfer protein
64Aave_0734787689..788693 [+], 1005120587894  [UniProt]  [KEGG]Conjugal transfer protein TrbG/VirB9/CagX
65Aave_0735788696..789835 [+], 1140120587895  [UniProt]  [KEGG]conjugation TrbI family protein
66Aave_0736789970..790215 [+], 246120587896  [UniProt]  [KEGG]conserved hypothetical protein
67Aave_0737790634..791257 [+], 624120587897 Cupin 2, conserved barrel domain protein
68Aave_0738791334..792800 [+], 1467120587898 major facilitator superfamily MFS_1
69Aave_0739792895..793182 [-], 288120587899 conserved hypothetical protein
70Aave_0740793471..794166 [-], 696120587900 conserved hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins64Fasta
(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 9:242. [PudMed:19941653] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature