ICEberg
ICEberg ID196
NameICE(Tn4371)6037
FamilyTn4371
OrganismDelftia acidovorans SPH-1
Size (bp)57901
GC content [Genome] (%)63.66 [66]
Insertion siteTTTTTCAT
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP000884 (complete ICE sequence in this genome)
Replicon chromosome (6767514 bp, Project:17413) [NC_010002]
Genome coordinates2958779..3016679
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of ICE(Tn4371)6037 form CP000884
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1Daci_26832953842..2954552 [-], 711160363708  [UniProt]  [KEGG]ABC transporter related
2Daci_26842954554..2955759 [-], 1206160363709  [UniProt]  [KEGG]protein of unknown function DUF214
3Daci_26852955756..2956907 [-], 1152160363710  [UniProt]  [KEGG]efflux transporter, RND family, MFP subunit
4Daci_26862956904..2957512 [-], 609160363711  [UniProt]  [KEGG]transcriptional regulator, TetR family
5Daci_26872957910..2958164 [+], 255160363712  [UniProt]  [KEGG]SCO1/SenC family protein
6Daci_26882958191..2958670 [+], 480160363713  [UniProt]  [KEGG]protein of unknown function DUF461
7Daci_26892958787..2959062 [-], 276160363714  [UniProt]  [KEGG]conserved hypothetical protein
8Daci_26902959059..2960327 [-], 1269160363715  [UniProt]  [KEGG]conjugation TrbI family protein
9Daci_26912960330..2961331 [-], 1002160363716  [UniProt]  [KEGG]P-type conjugative transfer protein TrbG
10Daci_26922961328..2962032 [-], 705160363717  [UniProt]  [KEGG]Conjugal transfer protein
11Daci_26932962051..2963403 [-], 1353160363718  [UniProt]  [KEGG]P-type conjugative transfer protein TrbL
12Daci_26942963400..2963726 [-], 327160363719  [UniProt]  [KEGG]putative lipoprotein
13Daci_26952963738..2964493 [-], 756160363720  [UniProt]  [KEGG]P-type conjugative transfer protein TrbJ
14Daci_26962964490..2966961 [-], 2472160363721  [UniProt]  [KEGG]AAA ATPase
15Daci_26972966976..2967248 [-], 273160363722  [UniProt]  [KEGG]putative conjugal transfer TrbD transmembrane protein
16Daci_26982967245..2967622 [-], 378160363723  [UniProt]  [KEGG]Conjugal transfer protein TrbC
17Daci_26992967619..2968653 [-], 1035160363724  [UniProt]  [KEGG]P-type conjugative transfer ATPase TrbB
18Daci_27002968650..2969114 [-], 465160363725  [UniProt]  [KEGG]CopG domain protein DNA-binding domain protein
19Daci_27012969111..2971120 [-], 2010160363726  [UniProt]  [KEGG]TRAG family protein
20Daci_27022971337..2971492 [-], 156160363727  [UniProt]  [KEGG]putative lipoprotein
21Daci_27032971590..2972504 [-], 915160363728  [UniProt]  [KEGG]transcriptional regulator, LysR familyVF
22Daci_27042972547..2972969 [-], 423160363729  [UniProt]  [KEGG]diacylglycerol kinase
23Daci_27052972981..2974654 [-], 1674160363730  [UniProt]  [KEGG]sulfatase
24Daci_27062974651..2975433 [-], 783160363731  [UniProt]  [KEGG]conserved hypothetical protein
25Daci_27072975420..2976667 [-], 1248160363732  [UniProt]  [KEGG]outer membrane efflux protein
26Daci_27082976715..2977035 [-], 321160363733  [UniProt]  [KEGG]conserved hypothetical protein
27Daci_27092977032..2980127 [-], 3096160363734  [UniProt]  [KEGG]heavy metal efflux pump, CzcA family
28Daci_27102980141..2981364 [-], 1224160363735  [UniProt]  [KEGG]efflux transporter, RND family, MFP subunit
29Daci_27112981675..2982226 [+], 552160363736  [UniProt]  [KEGG]cytochrome B561
30Daci_27122982268..2982975 [+], 708160363737  [UniProt]  [KEGG]protein of unknown function DUF125 transmembrane
31Daci_27132982989..2984401 [-], 1413160363738  [UniProt]  [KEGG]histidine kinase
32Daci_27142984405..2985070 [-], 666160363739  [UniProt]  [KEGG]two component transcriptional regulator, winged helix familyVF
33Daci_27152985085..2986428 [-], 1344160363740  [UniProt]  [KEGG]Ferric reductase domain protein transmembrane component domain
34Daci_27162986644..2989025 [-], 2382160363741  [UniProt]  [KEGG]conserved hypothetical protein
35Daci_27172989087..2989674 [-], 588160363742  [UniProt]  [KEGG]putative conjugal transfer TRAF transmembrane protein
36Daci_27182989671..2990195 [-], 525160363743  [UniProt]  [KEGG]conserved hypothetical protein
37Daci_27192990192..2990455 [-], 264160363744  [UniProt]  [KEGG]conserved hypothetical protein
38Daci_27202990452..2991090 [-], 639160363745  [UniProt]  [KEGG]Cobyrinic acid ac-diamide synthase
39Daci_27212991344..2992201 [-], 858160363746  [UniProt]  [KEGG]conserved hypothetical replication initiator and transcription repressor protein
40Daci_27222992228..2992524 [-], 297160363747  [UniProt]  [KEGG]conserved hypothetical protein
41Daci_27232992818..2993123 [+], 306160363748  [UniProt]  [KEGG]conserved hypothetical protein
42Daci_27242993131..2994531 [+], 1401160363749  [UniProt]  [KEGG]integrase family protein
43Daci_27252994541..2997150 [+], 2610160363750  [UniProt]  [KEGG]integrase family protein
44Daci_27262997147..2997827 [+], 681160363751  [UniProt]  [KEGG]alpha/beta hydrolase fold
45Daci_27272997973..2998737 [-], 765160363752  [UniProt]  [KEGG]conserved hypothetical protein
46Daci_27282999079..2999426 [-], 348160363753  [UniProt]  [KEGG]putative lipoprotein
47Daci_27292999650..2999943 [+], 294160363754  [UniProt]  [KEGG]helix-turn-helix domain protein
48Daci_27303000297..3000611 [-], 315160363755  [UniProt]  [KEGG]protein of unknown function DUF736
49Daci_27313001433..3001951 [+], 519160363756  [UniProt]  [KEGG]GCN5-related N-acetyltransferase
50Daci_27323002082..3002357 [-], 276160363757  [UniProt]  [KEGG]hypothetical protein
51Daci_27333002354..3004420 [-], 2067160363758  [UniProt]  [KEGG]ParB domain protein nuclease
52Daci_27343004496..3005323 [-], 828160363759  [UniProt]  [KEGG]protein of unknown function DUF932VF
53Daci_27353005848..3006111 [+], 264160363760  [UniProt]  [KEGG]hypothetical protein
54Daci_27363006259..3006558 [+], 300160363761  [UniProt]  [KEGG]conserved hypothetical protein
55Daci_27373006701..3006979 [-], 279160363762  [UniProt]  [KEGG]conserved hypothetical protein
56Daci_27383007043..3007393 [-], 351160363763  [UniProt]  [KEGG]conserved hypothetical protein
57Daci_27393007770..3008885 [-], 1116160363764  [UniProt]  [KEGG]hypothetical protein
58Daci_27403008886..3011141 [-], 2256160363765  [UniProt]  [KEGG]UBA/THIF-type NAD/FAD binding protein
59Daci_27413011138..3012331 [-], 1194160363766  [UniProt]  [KEGG]conserved hypothetical protein
60Daci_27423012421..3013323 [+], 903160363767  [UniProt]  [KEGG]conserved hypothetical protein
61Daci_27433013330..3014118 [+], 789160363768  [UniProt]  [KEGG]conserved hypothetical protein
62Daci_27443014164..3015300 [-], 1137160363769  [UniProt]  [KEGG]protein of unknown function DUF1016
63Daci_27453015297..3016544 [-], 1248160363770  [UniProt]  [KEGG]integrase family protein
64Daci_27463016730..3017338 [-], 609160363771 conserved hypothetical protein
65Daci_27473017570..3019570 [+], 2001160363772 acetate--CoA ligase
66Daci_27483019746..3020228 [+], 483160363773 conserved hypothetical protein
67Daci_27493020330..3020638 [-], 309160363774 cytochrome c class I
68Daci_27503020742..3020984 [+], 243160363775 conserved hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins57Fasta
(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 9:242. [PudMed:19941653] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature