ICEberg
ICEberg ID197
NameICE(Tn4371)6038
FamilyTn4371
OrganismComamonas testosteroni KF-1
Size (bp)52455
GC content [Genome] (%)63.77
Insertion siteTTTTTCAT
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAAUJ02000001 (complete ICE sequence in this contig)
Replicon-
Coordinates3228493..3280947
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of ICE(Tn4371)6038 form AAUJ02000001
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1CtesDRAFT_PD29523223496..3224206 [-], 711220712638 ABC transporter related
2CtesDRAFT_PD29533224208..3225413 [-], 1206220712639 protein of unknown function DUF214
3CtesDRAFT_PD29543225410..3226561 [-], 1152220712640 efflux transporter, RND family, MFP subunit
4CtesDRAFT_PD29553226558..3227166 [-], 609220712641 transcriptional regulator, TetR family
5CtesDRAFT_PD29563227564..3227818 [+], 255220712642 SCO1/SenC family protein
6CtesDRAFT_PD29573227845..3228324 [+], 480220712643 protein of unknown function DUF461
7CtesDRAFT_PD29583228441..3228716 [-], 276220712644 conserved hypothetical protein
8CtesDRAFT_PD29593228713..3229981 [-], 1269220712645  [UniProt] conjugation TrbI family protein
9CtesDRAFT_PD29603229984..3230985 [-], 1002220712646  [UniProt] P-type conjugative transfer protein TrbG
10CtesDRAFT_PD29613230982..3231686 [-], 705220712647  [UniProt] Conjugal transfer protein
11CtesDRAFT_PD29623231705..3233057 [-], 1353220712648  [UniProt] P-type conjugative transfer protein TrbL
12CtesDRAFT_PD29633233054..3233380 [-], 327220712649  [UniProt] putative lipoprotein
13CtesDRAFT_PD29643233392..3234147 [-], 756220712650  [UniProt] P-type conjugative transfer protein TrbJ
14CtesDRAFT_PD29653234144..3236615 [-], 2472220712651  [UniProt] AAA ATPase
15CtesDRAFT_PD29663236630..3236902 [-], 273220712652  [UniProt] putative conjugal transfer TrbD transmembrane protein
16CtesDRAFT_PD29673236899..3237285 [-], 387220712653  [UniProt] Conjugal transfer protein TrbC
17CtesDRAFT_PD29683237282..3238331 [-], 1050220712654  [UniProt] P-type conjugative transfer ATPase TrbB
18CtesDRAFT_PD29693238328..3238792 [-], 465220712655  [UniProt] CopG domain protein DNA-binding domain protein
19CtesDRAFT_PD29703238789..3240798 [-], 2010220712656  [UniProt] TRAG family protein
20CtesDRAFT_PD29713241015..3241242 [-], 228220712657  [UniProt] conserved hypothetical protein
21CtesDRAFT_PD29723241268..3241819 [-], 552220712658  [UniProt] LysR family transcriptional regulator
22CtesDRAFT_PD29733242659..3244332 [-], 1674220712659  [UniProt] sulfatase
23CtesDRAFT_PD29743244329..3245111 [-], 783220712660  [UniProt] conserved hypothetical protein
24CtesDRAFT_PD29753245098..3246396 [-], 1299220712661  [UniProt] outer membrane efflux protein
25CtesDRAFT_PD29763246393..3246713 [-], 321220712662  [UniProt] conserved hypothetical protein
26CtesDRAFT_PD29773246710..3249805 [-], 3096220712663  [UniProt] heavy metal efflux pump, CzcA family
27CtesDRAFT_PD29783249819..3251111 [-], 1293220712664  [UniProt] efflux transporter, RND family, MFP subunit
28CtesDRAFT_PD29793251352..3251906 [+], 555220712665  [UniProt] cytochrome B561
29CtesDRAFT_PD29803251948..3252655 [+], 708220712666  [UniProt] protein of unknown function DUF125 transmembrane
30CtesDRAFT_PD29813252669..3254081 [-], 1413220712667  [UniProt] histidine kinase
31CtesDRAFT_PD29823254085..3254750 [-], 666220712668  [UniProt] two component transcriptional regulator, winged helix familyVF
32CtesDRAFT_PD29833254765..3256108 [-], 1344220712669  [UniProt] Ferric reductase domain protein transmembrane component domain
33CtesDRAFT_PD29843256324..3258300 [-], 1977220712670  [UniProt] conserved hypothetical protein
34CtesDRAFT_PD29853258374..3258751 [-], 378220712671  [UniProt] conserved hypothetical protein
35CtesDRAFT_PD29863258748..3259335 [-], 588220712672  [UniProt] TraF peptidase. Serine peptidase. MEROPS family S26C
36CtesDRAFT_PD29873259332..3259856 [-], 525220712673  [UniProt] conserved hypothetical protein
37CtesDRAFT_PD29883259853..3260116 [-], 264220712674  [UniProt] conserved hypothetical protein
38CtesDRAFT_PD29893260113..3260751 [-], 639220712675  [UniProt] Cobyrinic acid ac-diamide synthase
39CtesDRAFT_PD29903261005..3261862 [-], 858220712676  [UniProt] conserved hypothetical replication initiator and transcription repressor protein
40CtesDRAFT_PD29913261889..3262170 [-], 282220712677  [UniProt] conserved hypothetical protein
41CtesDRAFT_PD29923262254..3263003 [-], 750220712678  [UniProt] conserved hypothetical protein
42CtesDRAFT_PD29933263346..3263693 [-], 348220712679  [UniProt] putative lipoprotein
43CtesDRAFT_PD29943263917..3264210 [+], 294220712680  [UniProt] helix-turn-helix domain protein
44CtesDRAFT_PD29953264564..3264878 [-], 315220712681  [UniProt] protein of unknown function DUF736
45CtesDRAFT_PD29963265592..3266218 [+], 627220712682  [UniProt] GCN5-related N-acetyltransferase
46CtesDRAFT_PD29973266349..3266558 [-], 210220712683  [UniProt] conserved hypothetical protein
47CtesDRAFT_PD29983266621..3268687 [-], 2067220712684  [UniProt] ParB domain protein nuclease
48CtesDRAFT_PD29993268763..3269590 [-], 828220712685  [UniProt] protein of unknown function DUF932VF
49CtesDRAFT_PD30003270527..3270826 [+], 300220712686  [UniProt] conserved hypothetical protein
50CtesDRAFT_PD30013270969..3271247 [-], 279220712687  [UniProt] conserved hypothetical protein
51CtesDRAFT_PD30023271311..3271661 [-], 351220712688  [UniProt] conserved hypothetical protein
52CtesDRAFT_PD30033272038..3273108 [-], 1071220712689  [UniProt] conserved hypothetical protein
53CtesDRAFT_PD30043273154..3275409 [-], 2256220712690  [UniProt] UBA/THIF-type NAD/FAD binding protein
54CtesDRAFT_PD30053275406..3276599 [-], 1194220712691  [UniProt] conserved hypothetical protein
55CtesDRAFT_PD30063276689..3277591 [+], 903220712692  [UniProt] conserved hypothetical protein
56CtesDRAFT_PD30073277598..3278386 [+], 789220712693  [UniProt] conserved hypothetical protein
57CtesDRAFT_PD30083278432..3279568 [-], 1137220712694  [UniProt] protein of unknown function DUF1016
58CtesDRAFT_PD30093279565..3280764 [-], 1200220712695  [UniProt] integrase family protein
59CtesDRAFT_PD30103280987..3281415 [-], 429220712696 conserved hypothetical protein
60CtesDRAFT_PD30113281533..3282987 [-], 1455220712697 cobyric acid synthase CobQ
61CtesDRAFT_PD30123282991..3283392 [-], 402220712698 conserved hypothetical protein
62CtesDRAFT_PD30133283379..3284233 [-], 855220712699 conserved hypothetical protein
63CtesDRAFT_PD30143284230..3285237 [-], 1008220712700 aminotransferase class I and II
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins51Fasta
(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 9:242. [PudMed:19941653] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature