ICEberg
ICEberg ID198
NameICE(Tn4371)6039
FamilyTn4371
OrganismAcidovorax sp. JS42
Size (bp)53489
GC content [Genome] (%)62.88 [66]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP000539 (complete ICE sequence in this genome)
Replicon chromosome (4448856 bp, Project:15685) [NC_008782]
Genome coordinates3075815..3129303
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of ICE(Tn4371)6039 form CP000539
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1Ajs_28973072923..3073810 [+], 888120607298 UDP-glucose pyrophosphorylase
2Ajs_28983073922..3074149 [-], 228120607299 SirA family protein
3Ajs_28993074155..3074718 [-], 564120607300 NUDIX hydrolase
4Ajs_29003074834..3075739 [-], 906120607301 cysteine synthase
5Ajs_29013076351..3076593 [-], 243120607302  [UniProt]  [KEGG]conserved hypothetical protein
6Ajs_29023076590..3077852 [-], 1263120607303  [UniProt]  [KEGG]conjugation TrbI family protein
7Ajs_29033077854..3078834 [-], 981120607304  [UniProt]  [KEGG]Conjugal transfer protein TrbG/VirB9/CagX
8Ajs_29043078831..3079535 [-], 705120607305  [UniProt]  [KEGG]Conjugal transfer protein
9Ajs_29053079554..3080888 [-], 1335120607306  [UniProt]  [KEGG]TrbL/VirB6 plasmid conjugal transfer protein
10Ajs_29063080885..3081208 [-], 324120607307  [UniProt]  [KEGG]putative lipoprotein
11Ajs_29073081220..3081948 [-], 729120607308  [UniProt]  [KEGG]putative conjugal transfer TrbJ signal peptide protein
12Ajs_29083081945..3084380 [-], 2436120607309  [UniProt]  [KEGG]AAA ATPase
13Ajs_29093084390..3084662 [-], 273120607310  [UniProt]  [KEGG]putative conjugal transfer TrbD transmembrane protein
14Ajs_29103084659..3085036 [-], 378120607311  [UniProt]  [KEGG]Conjugal transfer protein TrbC
15Ajs_29113085033..3086067 [-], 1035120607312  [UniProt]  [KEGG]type II secretion system protein E
16Ajs_29123086064..3086510 [-], 447120607313  [UniProt]  [KEGG]CopG domain protein DNA-binding domain protein
17Ajs_29133086507..3088504 [-], 1998120607314  [UniProt]  [KEGG]TRAG family protein
18Ajs_29153088740..3089018 [-], 279120607315  [UniProt]  [KEGG]putative lipoprotein
19Ajs_29163089151..3090665 [-], 1515120607316  [UniProt]  [KEGG]transposase IS66VF
20Ajs_29173090746..3091057 [-], 312120607317  [UniProt]  [KEGG]IS66 Orf2 family protein
21Ajs_29183091078..3091530 [-], 453120607318  [UniProt]  [KEGG]transposase IS3/IS911 family proteinVF
22Ajs_29193091527..3092432 [-], 906120607319  [UniProt]  [KEGG]transcriptional regulator, LysR family
23Ajs_29203092469..3092786 [-], 318120607320  [UniProt]  [KEGG]conserved hypothetical protein
24Ajs_29213092812..3093846 [-], 1035120607321  [UniProt]  [KEGG]secretion protein HlyD family protein
25Ajs_29233094607..3095569 [-], 963120607322  [UniProt]  [KEGG]transposase IS116/IS110/IS902 family protein
26Ajs_29243096608..3098143 [-], 1536120607323  [UniProt]  [KEGG]RND efflux system, outer membrane lipoprotein, NodT family
27Ajs_29253098244..3099023 [+], 780120607324  [UniProt]  [KEGG]transcriptional regulator, TetR family
28Ajs_29263099023..3099514 [+], 492120607325  [UniProt]  [KEGG]transcriptional regulator, MarR family
29Ajs_29273099511..3100470 [+], 960120607326  [UniProt]  [KEGG]transposase, IS4 family
30Ajs_29293103047..3103658 [-], 612120607327  [UniProt]  [KEGG]conjugation peptidase TraF
31Ajs_29303103655..3104200 [-], 546120607328  [UniProt]  [KEGG]conserved hypothetical protein
32Ajs_29313104197..3104472 [-], 276120607329  [UniProt]  [KEGG]plasmid segregation centromere-binding protein ParG
33Ajs_29323104469..3105107 [-], 639120607330  [UniProt]  [KEGG]plasmid segregation oscillating ATPase ParF
34Ajs_29333105361..3106218 [-], 858120607331  [UniProt]  [KEGG]conserved hypothetical replication initiator and transcription repressor protein
35Ajs_29343106245..3106565 [-], 321120607332  [UniProt]  [KEGG]conserved hypothetical protein
36Ajs_29353106634..3107383 [-], 750120607333  [UniProt]  [KEGG]conserved hypothetical protein
37Ajs_29363107725..3108072 [-], 348120607334  [UniProt]  [KEGG]putative lipoprotein
38Ajs_29373108295..3108588 [+], 294120607335  [UniProt]  [KEGG]helix-turn-helix domain protein
39Ajs_29383108818..3109861 [+], 1044120607336  [UniProt]  [KEGG]conserved hypothetical protein
40Ajs_29393110204..3110518 [-], 315120607337  [UniProt]  [KEGG]protein of unknown function DUF736
41Ajs_29413111327..3112142 [-], 816120607338  [UniProt]  [KEGG]hypothetical protein
42Ajs_29423112382..3112591 [-], 210120607339  [UniProt]  [KEGG]conserved hypothetical protein
43Ajs_29433112655..3114706 [-], 2052120607340  [UniProt]  [KEGG]ParB domain protein nuclease
44Ajs_29443114781..3115608 [-], 828120607341  [UniProt]  [KEGG]protein of unknown function DUF932VF
45Ajs_29463116240..3116488 [-], 249120607342  [UniProt]  [KEGG]hypothetical protein
46Ajs_29473116573..3117457 [+], 885120607343  [UniProt]  [KEGG]ATPase involved in chromosome partitioning-like protein
47Ajs_29483117454..3117897 [+], 444120607344  [UniProt]  [KEGG]hypothetical protein
48Ajs_29493118086..3118799 [+], 714120607345  [UniProt]  [KEGG]conserved hypothetical protein
49Ajs_29503118990..3120165 [+], 1176120607346  [UniProt]  [KEGG]3'-phosphoadenosine 5'-phosphosulfate sulfotransferase
50Ajs_29513120162..3120362 [+], 201120607347  [UniProt]  [KEGG]hypothetical protein
51Ajs_29523120378..3122429 [+], 2052120607348  [UniProt]  [KEGG]hypothetical protein
52Ajs_29533122618..3123988 [+], 1371120607349  [UniProt]  [KEGG]hypothetical protein
53Ajs_29543123985..3124947 [+], 963120607350  [UniProt]  [KEGG]transposase, IS4 family
54Ajs_29553125159..3125647 [+], 489120607351  [UniProt]  [KEGG]hypothetical protein
55Ajs_29563125647..3126864 [+], 1218120607352  [UniProt]  [KEGG]conserved hypothetical protein
56Ajs_29573127020..3127334 [-], 315120607353  [UniProt]  [KEGG]putative transcriptional regulatorTA
57Ajs_29583127312..3127662 [-], 351120607354  [UniProt]  [KEGG]protein of unknown function DUF891TA
58Ajs_29593127686..3129020 [-], 1335120607355  [UniProt]  [KEGG]phage integrase family protein
59Ajs_29603129524..3129895 [+], 372120607356 hypothetical protein
60Ajs_29613129919..3130179 [+], 261120607357 bacterial translation initiation factor 1 (bIF-1)
61Ajs_29623130256..3130564 [+], 309120607358 RNP-1 like RNA-binding protein
62Ajs_29633130811..3131299 [-], 489120607359 conserved hypothetical protein
63Ajs_29643131303..3132085 [-], 783120607360 short-chain dehydrogenase/reductase SDR
64Ajs_29653132097..3132633 [-], 537120607361 lipoprotein, putative
65Ajs_29663132630..3133949 [-], 1320120607362 major facilitator superfamily MFS_1
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins54Fasta
(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 9:242. [PudMed:19941653] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature