ICEberg
ICEberg ID199
NameICE(Tn4371)6040
FamilyTn4371
OrganismBordetella petrii DSM 12804
Size (bp)47191
GC content [Genome] (%)63.73 [65]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAM902716 (complete ICE sequence in this genome)
Replicon chromosome (5287950 bp, Project:28135) [NC_010170]
Genome coordinates2250540..2297731
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of ICE(Tn4371)6040 form AM902716
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1folC2245631..2246938 [+], 1308163260200 Folylpoly-gamma-glutamate synthetase / Dihydrofolate synthase
2Bpet21622246993..2247781 [+], 789163260201 putative membrane protein
3cvpA2247778..2248266 [+], 489163260202 colicin V production protein
4purF2248288..2249808 [+], 1521163260203 amidophosphoribosyltransferase
5dsbB2249869..2250336 [+], 468163260204 disulfide bond formation protein B
6int22250722..2251930 [+], 1209163260205  [UniProt]  [KEGG]-
7Bpet21672251969..2252328 [+], 360163260206  [UniProt]  [KEGG]hypothetical proteinTA
8Bpet21682252332..2252652 [+], 321163260207  [UniProt]  [KEGG]putative DNA-binding proteinTA
9Bpet21692252687..2253667 [+], 981163260208  [UniProt]  [KEGG]hypothetical protein
10Bpet21702253636..2253884 [+], 249163260209  [UniProt]  [KEGG]conserved hypothetical protein
11Bpet21712253871..2255667 [+], 1797163260210  [UniProt]  [KEGG]conserved hypothetical protein
12radC22256002..2256400 [+], 399163260211  [UniProt]  [KEGG]DNA repair protein radC homologVF
13Bpet21732256792..2257142 [+], 351163260212  [UniProt]  [KEGG]putative transposon
14Bpet21742257204..2258130 [-], 927163260213  [UniProt]  [KEGG]hypothetical protein predicted by Glimmer/Critica
15Bpet21752258841..2259671 [+], 831163260214  [UniProt]  [KEGG]conserved hypothetical proteinVF
16Bpet21762259737..2261800 [+], 2064163260215  [UniProt]  [KEGG]ParB-like nuclease
17Bpet21772261863..2262072 [+], 210163260216  [UniProt]  [KEGG]conserved hypothetical protein
18Bpet21782262115..2262312 [+], 198163260217  [UniProt]  [KEGG]hypothetical protein predicted by Glimmer/Critica
19Bpet21792262312..2263130 [+], 819163260218  [UniProt]  [KEGG]unknown protein
20Bpet21802263932..2264246 [+], 315163260219  [UniProt]  [KEGG]conserved hypothetical protein
21Bpet21812264604..2264897 [-], 294163260220  [UniProt]  [KEGG]predicted transcriptional regulator
22Bpet21822265103..2265450 [+], 348163260221  [UniProt]  [KEGG]probable lipoprotein
23Bpet21832265793..2266584 [+], 792163260222  [UniProt]  [KEGG]conserved hypothetical protein
24Bpet21842266653..2266949 [+], 297163260223  [UniProt]  [KEGG]hypothetical protein
25Bpet21852266976..2267833 [+], 858163260224  [UniProt]  [KEGG]hypothetical replication initiator and transcription repressor protein
26Bpet21862268087..2268725 [+], 639163260225  [UniProt]  [KEGG]putative partition protein
27Bpet21872268722..2269006 [+], 285163260226  [UniProt]  [KEGG]conserved hypothetical protein
28Bpet21882269003..2269548 [+], 546163260227  [UniProt]  [KEGG]probable transposon
29traF12269545..2270144 [+], 600163260228  [UniProt]  [KEGG]conjugal transfer protein TraF
30virD22270521..2272515 [+], 1995163260229  [UniProt]  [KEGG]probable conjugal transfer protein VirD2
31fadA22272658..2273791 [-], 1134163260230  [UniProt]  [KEGG]3-ketoacyl-CoA thiolase
32Bpet21922274115..2275116 [-], 1002163260231  [UniProt]  [KEGG]predicted oxidoreductase
33Bpet21932275144..2275611 [-], 468163260232  [UniProt]  [KEGG]conserved hypothetical protein
34fadA32275624..2276808 [-], 1185163260233  [UniProt]  [KEGG]-
35Bpet21952276828..2277355 [-], 528163260234  [UniProt]  [KEGG]Hypothetical UPF0152 protein HI1161.
36Bpet21962277415..2277879 [+], 465163260235  [UniProt]  [KEGG]transcriptional regulator, MarR family
37Bpet21972277876..2279153 [+], 1278163260236  [UniProt]  [KEGG]putative transmembrane transport protein
38nerA2279204..2279434 [+], 231163260237 pseudogene
39Bpetpseudo_092279400..2279561 [+], 162163260238 pseudogene
40Bpet21982279687..2280583 [-], 897163260239  [UniProt]  [KEGG]transcriptional regulator, LysR-family
41Bpet21992280769..2281881 [+], 1113163260240  [UniProt]  [KEGG]putative threonine aldolase
42Bpet22002282008..2282391 [+], 384163260241  [UniProt]  [KEGG]Probable tautomerase
43Bpet22012282366..2283625 [+], 1260163260242  [UniProt]  [KEGG]probable MFS permease
44Bpet22022283682..2284626 [+], 945163260243  [UniProt]  [KEGG]transcriptional regulator, LysR-family
45Bpet22032284623..2284901 [+], 279163260244  [UniProt]  [KEGG]putative lipoprotein
46traG12285138..2287141 [+], 2004163260245  [UniProt]  [KEGG]conjugal transfer protein TraG
47Bpet22052287138..2287602 [+], 465163260246  [UniProt]  [KEGG]putative DNA-binding protein
48trbB12287599..2288681 [+], 1083163260247  [UniProt]  [KEGG]conjugal transfer protein TrbB
49trbC12288678..2289070 [+], 393163260248  [UniProt]  [KEGG]conjugal transfer protein TrbC
50trbD12289067..2289339 [+], 273163260249  [UniProt]  [KEGG]conjugal transfer protein TrbD
51trbE12289352..2291817 [+], 2466163260250  [UniProt]  [KEGG]conjugal transfer protein TrbE
52trbJ12291814..2292539 [+], 726163260251  [UniProt]  [KEGG]conjugal transfer protein TrbJ
53Bpet22112292551..2292835 [+], 285163260252  [UniProt]  [KEGG]putative lipoprotein
54trbL12292832..2294202 [+], 1371163260253  [UniProt]  [KEGG]conjugal transfer protein TrbL
55trbF12294215..2294919 [+], 705163260254  [UniProt]  [KEGG]conjugal transfer protein TrbF
56trbG12294916..2295908 [+], 993163260255  [UniProt]  [KEGG]conjugal transfer protein TrbG
57trbI12295911..2297191 [+], 1281163260256  [UniProt]  [KEGG]conjugal transfer protein TrbI
58Bpet22162297188..2297430 [+], 243163260257  [UniProt]  [KEGG]hypothetical protein
59Bpet22172297655..2298419 [-], 765163260258 conserved hypothetical protein
60ugpQ2298435..2299205 [-], 771163260259 -
61Bpet22192299708..2301669 [+], 1962163260260 peptidyl-prolyl cis-trans isomerase D
62tesA2301654..2302286 [-], 633163260262 acyl-CoA thioesterase I precursor
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins53Fasta
(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 9:242. [PudMed:19941653] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature