ICEberg
ICEberg ID2
NameCTn341
FamilyCTnDOT/ERL
OrganismBacteroides fragilis unknown stain(s)
Size (bp)51993
GC content [Genome] (%)49.5
Insertion site-
FunctionTetracycline resistance
Species that ICE can be transferred toBacteroides spp.
Nucleotide SequenceAY515263 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1..51993
Link to view genome context of this ICE in the genome browser
experimental This is a ICE derived from experimental literature.
Complete gene list of CTn341 form AY515263
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1-1056..1451 [+], 39646242769  [UniProt] Ctn001
2-1465..1893 [+], 42946242770  [UniProt] Ctn002
3-1890..3173 [+], 128446242771  [UniProt] Ctn003
4-3702..3950 [+], 24946242772  [UniProt] Ctn004
5yahA4004..4312 [+], 30946242773  [UniProt] YahA
6-4477..5112 [+], 63646242774  [UniProt] Ctn006
7lys5185..5712 [-], 52846242775  [UniProt] Lys
8traQ5709..6215 [-], 50746242776  [UniProt] TraQ
9traP6234..7112 [-], 87946242777  [UniProt] TraP
10traO7121..7696 [-], 57646242778  [UniProt] TraO
11traN7699..8685 [-], 98746242779  [UniProt] TraN
12traM8754..10103 [-], 135046242780  [UniProt] TraM
13traL10084..10392 [-], 30946242781  [UniProt] TraL
14traK10398..11021 [-], 62446242782  [UniProt] TraK`s\vl VE`s\vl Vd>
15traJ11053..12057 [-], 100546242783  [UniProt] TraJ
16traI12061..12690 [-], 63046242784  [UniProt] TraI
17traH12717..13106 [-], 39046242785  [UniProt] TraH
18traG13138..15822 [-], 268546242786  [UniProt] TraG
19traF15639..15971 [-], 33346242787  [UniProt] TraF
20traE15982..16293 [-], 31246242788  [UniProt] TraE
21traD16494..17234 [-], 74146242789  [UniProt] TraD
22traC17231..17593 [-], 36346242790  [UniProt] TraC
23traB17617..18066 [-], 45046242791  [UniProt] TraB
24traA18072..18827 [-], 75646242792  [UniProt] TraA
25mobA19509..19937 [+], 42946242793  [UniProt]  [KEGG]MobA
26mobB19916..21163 [+], 124846242794  [UniProt]  [KEGG]MobB
27mobC21194..23212 [+], 201946242795  [UniProt]  [KEGG]MobC
28-23344..26598 [-], 325546242796  [UniProt]  [KEGG]Ctn028
29-26615..27745 [-], 113146242797  [UniProt]  [KEGG]Cnt029
30rteC28047..28700 [-], 65446242798  [UniProt] RteC
31-28891..29313 [-], 42346242799  [UniProt]  [KEGG]Ctn031
32rteB29593..30915 [-], 132346242800  [UniProt]  [KEGG]RteB
33rteA30908..33226 [-], 231946242801  [UniProt] RteA
34tetQ33226..35151 [-], 192646242802  [UniProt] TetQAR
35bmhA35809..44073 [-], 826546242803  [UniProt]  [KEGG]BmhA
36matR38561..40360 [-], 180046242804  [UniProt] MatR
37-44063..44650 [-], 58846242805  [UniProt]  [KEGG]Ctn038
38exc44678..46765 [-], 208846242806  [UniProt]  [KEGG]Exc
39-46826..48397 [-], 157246242807  [UniProt]  [KEGG]Ctn040
40-48418..48768 [-], 35146242808  [UniProt]  [KEGG]Ctn041
41-48772..49134 [-], 36346242809  [UniProt] Ctn042
42-49336..49635 [+], 30046242810  [UniProt] Ctn043
43-49750..50001 [+], 25246242811  [UniProt] Ctn044
44rhuM50050..50412 [-], 36346242812  [UniProt]  [KEGG]RhuM
45int50424..51659 [-], 123646242813  [UniProt]  [KEGG]Int
 
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer
regulation Gene may play role in regulation of transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins45Fasta
(1) Peed L; Parker AC; Smith CJ (2010). Genetic and functional analyses of the mob operon on conjugative transposon CTn341 from Bacteroides spp. J Bacteriol. 192(18):4643-50. [PudMed:20639338] experimental
(2) Bacic M; Parker AC; Stagg J; Whitley HP; Wells WG; Jacob LA; Smith CJ (2005). Genetic and structural analysis of the Bacteroides conjugative transposon CTn341. J Bacteriol. 187(8):2858-69. [PudMed:15805532] experimental
(3) Smith CJ; Parker AC; Bacic M (2001). Analysis of a Bacteroides conjugative transposon using a novel "targeted capture" model system. Plasmid. 46(1):47-56. [PudMed:11535035] experimental
 
experimental experimental literature