ICEberg
ICEberg ID201
NameICE(Tn4371)6042
FamilyTn4371
OrganismPseudomonas aeruginosa PA7
Size (bp)55287
GC content [Genome] (%)52.38 [66]
Insertion siteTTTTTTGT
FunctionStreptomycin, bleomycin and aminoglycoside resistance
Species that ICE can be transferred to-
Nucleotide SequenceCP000744 (complete ICE sequence in this genome)
Replicon chromosome (6588339 bp, Project:16720) [NC_009656]
Genome coordinates3829571..3884857
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of ICE(Tn4371)6042 form CP000744
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1sdhB3824623..3825330 [-], 708150961679 succinate dehydrogenase (B subunit)
2sdhA3825342..3827114 [-], 1773150959692 succinate dehydrogenase, flavoprotein subunit
3sdhD3827118..3827492 [-], 375150959426 succinate dehydrogenase, hydrophobic membrane anchor protein
4sdhC3827480..3827866 [-], 387150960997 succinate dehydrogenase, cytochrome b556 subunit
5gltA3828215..3829501 [+], 1287150962353 citrate (Si)-synthase
6PSPA7_36953830088..3832118 [+], 2031150961681  [UniProt]  [KEGG]putative helicase
7PSPA7_36963832400..3832624 [-], 225150962584  [UniProt]  [KEGG]conjugal transfer protein
8PSPA7_36973832621..3833898 [-], 1278150964499  [UniProt]  [KEGG]conjugation TrbI family protein
9PSPA7_36983833901..3834893 [-], 993150959058  [UniProt]  [KEGG]conjugal transfer protein TrbG/VirB9/CagX
10PSPA7_36993834890..3835594 [-], 705150960851  [UniProt]  [KEGG]conjugal transfer protein
11trbL3835607..3836992 [-], 1386150960336  [UniProt]  [KEGG]conjugal transfer protein TrbL
12PSPA7_37013836989..3837309 [-], 321150959824  [UniProt]  [KEGG]lipoprotein, putative
13trbJ3837322..3838047 [-], 726150958912  [UniProt]  [KEGG]P-type conjugative transfer protein TrbJ
14PSPA7_37033838044..3840497 [-], 2454150963648  [UniProt]  [KEGG]ATPase
15PSPA7_37043840513..3840785 [-], 273150963142  [UniProt]  [KEGG]conjugal transfer protein
16PSPA7_37053840782..3841165 [-], 384150962540  [UniProt]  [KEGG]conjugal transfer protein TrbC
17trbB3841162..3842214 [-], 1053150961698  [UniProt]  [KEGG]P-type conjugative transfer ATPase TrbB
18PSPA7_37073842211..3842675 [-], 465150959961  [UniProt]  [KEGG]CopG domain protein DNA-binding domain protein
19PSPA7_37083842672..3844681 [-], 2010150959713  [UniProt]  [KEGG]TraG
20PSPA7_37093844916..3845179 [-], 264150962056  [UniProt]  [KEGG]lipoprotein, putative
21PSPA7_37103845182..3846120 [-], 939150964470  [UniProt]  [KEGG]transcriptional regulator, LysR family
22PSPA7_37113846633..3847340 [+], 708150960773  [UniProt]  [KEGG]conserved hypothetical protein
23kdpA13847403..3849130 [+], 1728150959714  [UniProt]  [KEGG]K+-transporting ATPase, A subunit
24kdpB13849143..3851167 [+], 2025150959164  [UniProt]  [KEGG]K+-transporting ATPase, B subunit
25kdpC13851178..3851840 [+], 663150964207  [UniProt]  [KEGG]K+-transporting ATPase, C subunit
26PSPA7_37153851837..3852130 [+], 294150963654  [UniProt]  [KEGG]PTS system, nitrogen regulatory IIA component
27PSPA7_37163852111..3854855 [+], 2745150962639  [UniProt]  [KEGG]sensor protein KdpD
28PSPA7_37173854836..3855570 [+], 735150961805  [UniProt]  [KEGG]KDP operon transcriptional regulatory protein KdpEVF
29PSPA7_37183855983..3856195 [-], 213150960988  [UniProt]  [KEGG]VirD2 components relaxase
30PSPA7_37193856321..3857121 [-], 801150961662  [UniProt]  [KEGG]streptomycin 3''-kinase (Streptomycin 3''-phosphotransferase) (SPH)AR
31PSPA7_37203857160..3857540 [-], 381150959236  [UniProt]  [KEGG]bleomycin resistance protein (BRP) (resistance protein)
32PSPA7_37213857561..3858355 [-], 795150959887  [UniProt]  [KEGG]aminoglycoside 3'-phosphotransferase
33PSPA7_37223858698..3858976 [-], 279150963453  [UniProt]  [KEGG]lipoprotein, putative
34PSPA7_37233858973..3859905 [-], 933150964900  [UniProt]  [KEGG]transcriptional regulator, LysR family
35PSPA7_37243859909..3860727 [-], 819150962068  [UniProt]  [KEGG]putative membrane protein
36PSPA7_37253861344..3862120 [+], 777150962727  [UniProt]  [KEGG]DNA-binding protein
37PSPA7_37263862164..3864137 [-], 1974150960761  [UniProt]  [KEGG]conserved hypothetical protein
38PSPA7_37273864574..3865185 [-], 612150960607  [UniProt]  [KEGG]conjugal transfer protein
39PSPA7_37283865182..3865727 [-], 546150959098  [UniProt]  [KEGG]hypothetical protein
40PSPA7_37293865724..3865837 [-], 114150959419  [UniProt]  [KEGG]conserved hypothetical protein
41PSPA7_37303866005..3866643 [-], 639150958754  [UniProt]  [KEGG]cobyrinic Acid a,c-diamide synthase
42PSPA7_37313866897..3867754 [-], 858150959388  [UniProt]  [KEGG]replication protein A
43PSPA7_37323867769..3868053 [-], 285150961513  [UniProt]  [KEGG]conserved hypothetical protein
44PSPA7_37333868165..3868935 [-], 771150960834  [UniProt]  [KEGG]hypothetical protein
45PSPA7_37343868992..3869126 [-], 135150962752  [UniProt]  [KEGG]hypothetical protein
46PSPA7_37353869281..3869631 [-], 351150962136  [UniProt]  [KEGG]conserved hypothetical protein
47PSPA7_37373870008..3870244 [+], 237150964395  [UniProt]  [KEGG]helix-turn-helix domain protein
48PSPA7_37363870241..3871686 [-], 1446150963655  [UniProt]  [KEGG]transposase
49PSPA7_37393872830..3872994 [+], 165150960677  [UniProt]  [KEGG]hypothetical protein
50PSPA7_37383872991..3873305 [-], 315150961777  [UniProt]  [KEGG]conserved hypothetical protein
51PSPA7_37403874118..3876196 [-], 2079150959406  [UniProt]  [KEGG]ParB domain protein nuclease
52PSPA7_37413876277..3877107 [-], 831150960041  [UniProt]  [KEGG]protein YafZVF
53PSPA7_37423878862..3880544 [+], 1683150964238  [UniProt]  [KEGG]hypothetical protein
54PSPA7_37433881480..3882175 [+], 696150961830  [UniProt]  [KEGG]transcriptional regulator, XRE family
55PSPA7_37443882475..3882648 [-], 174150962805  [UniProt]  [KEGG]hypothetical protein
56PSPA7_37453882654..3882974 [-], 321150960840  [UniProt]  [KEGG]transcriptional regulator, XRE familyTA
57PSPA7_37463882971..3883336 [-], 366150961459  [UniProt]  [KEGG]conserved hypothetical proteinTA
58PSPA7_37473883476..3884675 [-], 1200150959365  [UniProt]  [KEGG]integrase
59PSPA7_37483884895..3885566 [-], 672150963496 hypothetical protein
60PSPA7_37493885637..3886041 [-], 405150963109 Fe-S-cluster domain
61PSPA7_37503885996..3886694 [-], 699150959915 hypothetical protein
62PSPA7_37513886863..3887204 [+], 342150964605 hypothetical protein
63PSPA7_37523887211..3888077 [-], 867150960212 probable 3-hydroxyisobutyrate dehydrogenase
64PSPA7_37533888181..3888732 [+], 552150961967 hypothetical protein
65PSPA7_37543888827..3889108 [+], 282150963101 conserved hypothetical protein
66PSPA7_37553889223..3889822 [-], 600150962770 NADH:ubiquinone oxidoreductase, Na
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins53Fasta
(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 9:242. [PudMed:19941653] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature