ICEberg
ICEberg ID202
NameICE(Tn4371)6066
FamilyTn4371
OrganismAcidovorax ebreus TPSY
Size (bp)49020
GC content [Genome] (%)65.3 [66]
Insertion siteTTTTTCAT
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP001392 (complete ICE sequence in this genome)
Replicon chromosome (3796573 bp, Project:29975) [NC_011992]
Genome coordinates3746937..3795957
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of ICE(Tn4371)6066 form CP001392
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1Dtpsy_34923743332..3743886 [+], 555221732097 adenine phosphoribosyltransferase
2Dtpsy_34933743922..3744758 [-], 837221732098 conserved hypothetical protein
3Dtpsy_34943744896..3745417 [-], 522221732099 cyclic nucleotide-binding protein
4Dtpsy_34953745475..3746878 [-], 1404221732100 tRNA modification GTPase TrmE
5Dtpsy_34963747218..3747463 [-], 246221732101  [UniProt]  [KEGG]conserved hypothetical protein
6Dtpsy_34973747460..3748731 [-], 1272221732102  [UniProt]  [KEGG]conjugation TrbI family protein
7Dtpsy_34983748734..3749726 [-], 993221732103  [UniProt]  [KEGG]P-type conjugative transfer protein TrbG
8Dtpsy_34993749723..3750427 [-], 705221732104  [UniProt]  [KEGG]Conjugal transfer protein
9Dtpsy_35003750446..3751798 [-], 1353221732105  [UniProt]  [KEGG]P-type conjugative transfer protein TrbL
10Dtpsy_35013751795..3752103 [-], 309221732106  [UniProt]  [KEGG]putative lipoprotein
11Dtpsy_35023752115..3752870 [-], 756221732107  [UniProt]  [KEGG]P-type conjugative transfer protein TrbJ
12Dtpsy_35033752867..3755338 [-], 2472221732108  [UniProt]  [KEGG]CagE TrbE VirB component of type IV transporter system
13Dtpsy_35043755353..3755625 [-], 273221732109  [UniProt]  [KEGG]putative conjugal transfer TrbD transmembrane protein
14Dtpsy_35053755622..3756008 [-], 387221732110  [UniProt]  [KEGG]Conjugal transfer protein TrbC
15Dtpsy_35063756005..3757039 [-], 1035221732111  [UniProt]  [KEGG]P-type conjugative transfer ATPase TrbB
16Dtpsy_35073757036..3757500 [-], 465221732112  [UniProt]  [KEGG]CopG domain protein DNA-binding domain protein
17Dtpsy_35083757497..3759500 [-], 2004221732113  [UniProt]  [KEGG]TRAG family protein
18Dtpsy_35093759716..3759943 [-], 228221732114  [UniProt]  [KEGG]conserved hypothetical protein
19Dtpsy_35103759969..3760883 [-], 915221732115  [UniProt]  [KEGG]transcriptional regulator, LysR family
20Dtpsy_35113761127..3761756 [-], 630221732116  [UniProt]  [KEGG]two component transcriptional regulator, LuxR family
21Dtpsy_35123761753..3762826 [-], 1074221732117  [UniProt]  [KEGG]histidine kinase
22Dtpsy_35133762831..3763076 [-], 246221732118  [UniProt]  [KEGG]protein of unknown function DUF156
23Dtpsy_35143763140..3763868 [-], 729221732119  [UniProt]  [KEGG]MgtC/SapB transporterVF
24Dtpsy_35153763892..3766684 [-], 2793221732120  [UniProt]  [KEGG]magnesium-translocating P-type ATPaseVF
25Dtpsy_35163766681..3768189 [-], 1509221732121  [UniProt]  [KEGG]RND efflux system, outer membrane lipoprotein, NodT family
26Dtpsy_35173768186..3771314 [-], 3129221732122  [UniProt]  [KEGG]heavy metal efflux pump, CzcA family
27Dtpsy_35183771307..3772437 [-], 1131221732123  [UniProt]  [KEGG]efflux transporter, RND family, MFP subunit
28Dtpsy_35193772578..3772898 [-], 321221732124  [UniProt]  [KEGG]hypothetical protein
29Dtpsy_35203773366..3775333 [-], 1968221732125  [UniProt]  [KEGG]conserved hypothetical protein
30Dtpsy_35213775782..3776369 [-], 588221732126  [UniProt]  [KEGG]TraF peptidase. Serine peptidase. MEROPS family S26C
31Dtpsy_35223776366..3776899 [-], 534221732127  [UniProt]  [KEGG]conserved hypothetical protein
32Dtpsy_35233776896..3777168 [-], 273221732128  [UniProt]  [KEGG]conserved hypothetical protein
33Dtpsy_35243777165..3777803 [-], 639221732129  [UniProt]  [KEGG]Cobyrinic acid ac-diamide synthase
34Dtpsy_35263778057..3778914 [-], 858221732130  [UniProt]  [KEGG]putative replication initiator and transcription repressor protein
35Dtpsy_35273778941..3779222 [-], 282221732131  [UniProt]  [KEGG]conserved hypothetical protein
36Dtpsy_35283779306..3780067 [-], 762221732132  [UniProt]  [KEGG]conserved hypothetical protein
37Dtpsy_35293780398..3780748 [-], 351221732133  [UniProt]  [KEGG]putative lipoprotein
38Dtpsy_35303781007..3781300 [+], 294221732134  [UniProt]  [KEGG]transcriptional regulator, XRE family
39Dtpsy_35313781660..3781974 [-], 315221732135  [UniProt]  [KEGG]protein of unknown function DUF736
40Dtpsy_35333783077..3783286 [-], 210221732136  [UniProt]  [KEGG]conserved hypothetical protein
41Dtpsy_35343783349..3785412 [-], 2064221732137  [UniProt]  [KEGG]ParB domain protein nuclease
42Dtpsy_35353785493..3786323 [-], 831221732138  [UniProt]  [KEGG]protein of unknown function DUF932VF
43Dtpsy_35363787063..3787413 [-], 351221732139  [UniProt]  [KEGG]conserved hypothetical protein
44Dtpsy_35373787713..3788105 [-], 393221732140  [UniProt]  [KEGG]conserved hypothetical protein
45Dtpsy_35383788381..3788890 [-], 510221732141  [UniProt]  [KEGG]DNA repair protein RadCVF
46Dtpsy_35393789216..3790385 [-], 1170221732142  [UniProt]  [KEGG]protein of unknown function DUF1016
47Dtpsy_35403790382..3791581 [-], 1200221732143  [UniProt]  [KEGG]integrase family protein
48Dtpsy_35413791916..3793502 [-], 1587221732144  [UniProt]  [KEGG]extracellular solute-binding protein family 5
49Dtpsy_35423793633..3795342 [-], 1710221732145  [UniProt]  [KEGG]YidC translocase/secretase
50Dtpsy_35433795339..3795635 [-], 297221732146  [UniProt]  [KEGG]protein of unknown function DUF37
51Dtpsy_35443795632..3796105 [-], 474221732147 conserved hypothetical protein
52Dtpsy_35453796176..3796310 [-], 135221732148 ribosomal protein L34
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins46Fasta
(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 9:242. [PudMed:19941653] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature