ICEberg
ICEberg ID204
NameICE(Tn4371)6068
FamilyTn4371
OrganismStenotrophomonas maltophilia K279a
Size (bp)43509
GC content [Genome] (%)62.76 [66]
Insertion siteTTTTTTGT
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAM743169 (complete ICE sequence in this genome)
Replicon chromosome (4851126 bp, Project:30351) [NC_010943]
Genome coordinates1324222..1367730
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of ICE(Tn4371)6068 form AM743169
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1rplU1322082..1322390 [+], 309190011218 putative 50S ribosomal protein L21
2rpmA1322409..1322672 [+], 264190011219 putative 50S ribosomal protein L27
3Smlt12801322866..1323918 [+], 1053190011220 putative conserved GTP-binding protein
4Smlt12821324492..1324737 [-], 246190011221  [UniProt]  [KEGG]conserved hypothetical protein
5trbI1324734..1325993 [-], 1260190011222  [UniProt]  [KEGG]putative conjugal transfer protein
6trbG1325996..1326982 [-], 987190011223  [UniProt]  [KEGG]putative conjugal transfer protein
7trbF1326979..1327683 [-], 705190011224  [UniProt]  [KEGG]putative conjugal transfer protein
8trbL1327702..1329000 [-], 1299190011225  [UniProt]  [KEGG]putative conjugal transfer protein
9trbJ1329012..1329749 [-], 738190011226  [UniProt]  [KEGG]putative conjugal transfer protein
10trbE1329746..1332232 [-], 2487190011227  [UniProt]  [KEGG]putative conjugal transfer protein
11trbD1332243..1332515 [-], 273190011228  [UniProt]  [KEGG]putative conjugal transfer protein
12trbC1332512..1332895 [-], 384190011229  [UniProt]  [KEGG]putative conjugal transfer protein
13trbB1332892..1333932 [-], 1041190011230  [UniProt]  [KEGG]putative conjugal transfer protein
14Smlt12921333929..1334375 [-], 447190011231  [UniProt]  [KEGG]conserved hypothetical protein
15traG1334372..1336372 [-], 2001190011232  [UniProt]  [KEGG]putative conjugal transfer protein
16Smlt12941336606..1336866 [-], 261190011233  [UniProt]  [KEGG]conserved hypothetical protein
17Smlt12951336911..1337804 [-], 894190011234  [UniProt]  [KEGG]putative LysR family transcriptional regulator
18Smlt12961337815..1337940 [-], 126pseudogene putative regulator, pseudogene
19Smlt12971337956..1338126 [-], 171pseudogene putative esterase, pseudogene
20Smlt12981338123..1338425 [-], 303190011235  [UniProt]  [KEGG]conserved hypothetical protein
21Smlt12991338412..1339266 [-], 855190011236  [UniProt]  [KEGG]putative NAD(P)H dehydrogenase [quinone]
22Smlt13001339362..1340264 [+], 903190011237  [UniProt]  [KEGG]putative LysR family transcriptional regulatorVF
23Smlt13011340359..1340619 [-], 261190011238  [UniProt]  [KEGG]conserved hypothetical protein
24Smlt13021340656..1341549 [-], 894190011239  [UniProt]  [KEGG]putative LysR family transcriptional regulator
25Smlt13031341582..1342424 [-], 843190011240  [UniProt]  [KEGG]conserved hypothetical protein
26Smlt13041342421..1342804 [-], 384190011241  [UniProt]  [KEGG]putative 4-carboxymuconolactone decarboxylase
27Smlt13051342737..1343207 [-], 471190011242  [UniProt]  [KEGG]putative MerR family transcriptional regulator
28Smlt13061343295..1344665 [-], 1371190011243  [UniProt]  [KEGG]putative MFS family transmembrane transporter
29Smlt13071344784..1345635 [+], 852190011244  [UniProt]  [KEGG]putative LysR family transcriptional regulator
30Smlt13081345632..1347596 [-], 1965190011245  [UniProt]  [KEGG]conserved hypothetical protein
31Smlt13091347593..1348030 [-], 438190011246  [UniProt]  [KEGG]conserved hypothetical protein
32Smlt13101348056..1348631 [-], 576190011247  [UniProt]  [KEGG]putative transmembrane anchor conjugal transfer protein
33Smlt13111348628..1349152 [-], 525190011248  [UniProt]  [KEGG]conserved hypothetical protein
34Smlt13121349149..1349412 [-], 264190011249  [UniProt]  [KEGG]putative parB partition protein
35Smlt13131349409..1350047 [-], 639190011250  [UniProt]  [KEGG]putative ParA/CobQ/CobB/MinD nucleotide binding domain protein
36Smlt13141350298..1351131 [-], 834190011251  [UniProt]  [KEGG]putative RepA-like replication protein
37Smlt13151351158..1351448 [-], 291190011252  [UniProt]  [KEGG]conserved hypothetical protein
38Smlt13161351532..1352335 [-], 804190011253  [UniProt]  [KEGG]conserved hypothetical protein
39Smlt13181352687..1353037 [-], 351190011254  [UniProt]  [KEGG]conserved hypothetical protein
40Smlt13191353340..1353636 [+], 297190011255  [UniProt]  [KEGG]putative HTH transcriptional regulator
41Smlt13201353993..1354307 [-], 315190011256  [UniProt]  [KEGG]conserved hypothetical protein
42Smlt1320A1354642..1355064 [-], 423190011257  [UniProt]  [KEGG]conserved hypothetical protein
43Smlt13221355155..1355490 [+], 336190011258  [UniProt]  [KEGG]hypothetical protein
44Smlt13231355532..1356575 [+], 1044190011259  [UniProt]  [KEGG]putative transposase
45Smlt13241356572..1357087 [+], 516190011260  [UniProt]  [KEGG]conserved hypothetical protein
46Smlt13251357200..1357388 [-], 189190011261  [UniProt]  [KEGG]conserved hypothetical protein
47Smlt13261357451..1359481 [-], 2031190011262  [UniProt]  [KEGG]putative ParB-like nuclease domain protein
48Smlt13271359562..1360392 [-], 831190011263  [UniProt]  [KEGG]conserved hypothetical proteinVF
49Smlt13281360425..1360622 [-], 198190011264  [UniProt]  [KEGG]conserved hypothetical protein
50Smlt13291361053..1362183 [+], 1131190011265  [UniProt]  [KEGG]conserved hypothetical protein
51Smlt13311362149..1363831 [+], 1683190011266  [UniProt]  [KEGG]putative transmembrane protein
52Smlt13321363664..1364188 [-], 525pseudogene putative RadC DNA repair protein, pseudogene
53Smlt13331364225..1365508 [-], 1284190011267  [UniProt]  [KEGG]conserved hypothetical protein
54Smlt13341365534..1365839 [-], 306190011268  [UniProt]  [KEGG]conserved hypothetical proteinTA
55Smlt13351365820..1366203 [-], 384190011269  [UniProt]  [KEGG]conserved hypothetical proteinTA
56Smlt13361366343..1367584 [-], 1242190011270  [UniProt]  [KEGG]putative prophage integrase
57rpsT1367795..1368064 [-], 270190011271 putative 30S ribosomal protein S20
58mviN1368167..1369786 [+], 1620190011272 putative transmembrane virulence factor MmviN
59ribF1369862..1370809 [+], 948190011273 putative riboflavin biosynthesis protein RibF
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins50Fasta
(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 9:242. [PudMed:19941653] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature