ICEberg
ICEberg ID206
NameAICEFraal5456
FamilyUnclassified
OrganismFrankia alni ACN14a
Size (bp)13245
GC content [Genome] (%)61 [72]
Insertion sitetRNA-Met (FRAALtRNA33)
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCT573213 (complete ICE sequence in this genome)
Replicon chromosome (7497934 bp, Project:17403) [NC_008278]
Genome coordinates5891518..5904762
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of AICEFraal5456 form CT573213
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1FRAAL54355887289..5887882 [-], 594111152334 Putative RNA polymerase ECF-subfamily sigma factor
2FRAAL54375888798..5890135 [+], 1338111152335 Hypothetical protein
3FRAAL54385891344..5891445 [+], 102111152336 hypothetical protein
4FRAAL54395891518..5891631 [+], 114111152337  [UniProt]  [KEGG]hypothetical protein
5FRAAL54405891557..5892339 [-], 783111152338  [UniProt]  [KEGG]Regulatory protein cII (partial)
6FRAAL54415892286..5892348 [+], 63111152339  [UniProt]  [KEGG]hypothetical protein
7FRAAL54425892852..5894018 [-], 1167111152340  [UniProt]  [KEGG]Conserved hypothetical protein
8FRAAL54435894005..5894991 [-], 987111152341  [UniProt]  [KEGG]Hypothetical protein; putative plasmid protein
9FRAAL54445895403..5895633 [+], 231111152342  [UniProt]  [KEGG]hypothetical protein
10FRAAL54455895630..5896466 [+], 837111152343  [UniProt]  [KEGG]Conserved hypothetical protein
11FRAAL54465896523..5896975 [+], 453111152344  [UniProt]  [KEGG]Hypothetical protein; putative Modular polyketide synthase
12FRAAL54475897205..5897624 [-], 420111152345  [UniProt]  [KEGG]Putative Transcriptional regulator
13FRAAL54485897841..5898245 [+], 405111152346  [UniProt]  [KEGG]hypothetical protein
14FRAAL54495898323..5898541 [+], 219111152347  [UniProt]  [KEGG]hypothetical protein; putative signal peptide
15traSA5898664..5900232 [+], 1569111152348  [UniProt]  [KEGG]Plasmid transfer protein
16repSA5900281..5901957 [+], 1677111152349  [UniProt]  [KEGG]Replication initiator protein
17xis5901992..5902183 [+], 192111152350  [UniProt]  [KEGG]Excisionase (partial)
18FRAAL54535902190..5902393 [-], 204111152351  [UniProt]  [KEGG]conserved hypothetical protein
19FRAAL54545902544..5902843 [+], 300111152352  [UniProt]  [KEGG]hypothetical protein
20FRAAL54555903080..5903283 [+], 204111152353  [UniProt]  [KEGG]hypothetical protein
21int5903232..5904560 [+], 1329111152354  [UniProt]  [KEGG]Integrase (Recombinase)
22FRAAL54575905007..5905198 [+], 192111152355 hypothetical protein
23FRAAL54585905171..5905950 [-], 780111152356 conserved hypothetical protein
24FRAAL54595906070..5906177 [+], 108111152357 hypothetical protein
25FRAAL54605906639..5907145 [+], 507111152358 Putative TetR-family transcriptional regulator
26FRAAL54615907230..5908270 [-], 1041111152359 putative Epoxide hydratase
27FRAAL54625908290..5908868 [+], 579111152360 putative TetR-family transcriptional regulator
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins18Fasta
(1) te Poele EM; Bolhuis H; Dijkhuizen L (2008). Actinomycete integrative and conjugative elements. Antonie Van Leeuwenhoek. 94(1):127-43. [PudMed:18523858]