ICEberg
ICEberg ID208
NameAICEFranean6303
FamilyUnclassified
OrganismFrankia sp. EAN1pec
Size (bp)19945
GC content [Genome] (%)66 [71]
Insertion sitetRNA-Arg (Franean1_R0052)
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP000820 (complete ICE sequence in this genome)
Replicon chromosome (8982042 bp, Project:13915) [NC_009921]
Genome coordinates7658758..7678702
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of AICEFranean6303 form CP000820
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1Franean1_63017656305..7657864 [-], 1560158113446 major facilitator superfamily MFS_1
2Franean1_63027658010..7658543 [+], 534158113447 phosphodiesterase, MJ0936 family
3Franean1_63037659082..7660332 [-], 1251158113448  [UniProt]  [KEGG]integrase family protein
4Franean1_63047660332..7660541 [-], 210158113449  [UniProt]  [KEGG]conserved hypothetical protein
5Franean1_63057660795..7661094 [-], 300158113450  [UniProt]  [KEGG]conserved hypothetical protein
6Franean1_63067661221..7661415 [-], 195158113451  [UniProt]  [KEGG]DNA binding domain, excisionase family
7Franean1_63077661447..7663165 [-], 1719158113452  [UniProt]  [KEGG]replication initiator protein
8Franean1_63087663377..7664936 [-], 1560158113453  [UniProt]  [KEGG]cell divisionFtsK/SpoIIIE
9Franean1_63097665018..7665305 [-], 288158113454  [UniProt]  [KEGG]hypothetical protein
10Franean1_63107665302..7665706 [-], 405158113455  [UniProt]  [KEGG]plasmid replication, integration and excision activator
11Franean1_63117665929..7666309 [+], 381158113456  [UniProt]  [KEGG]helix-turn-helix domain protein
12Franean1_63127666379..7666765 [-], 387158113457  [UniProt]  [KEGG]hypothetical protein
13Franean1_63137666831..7667115 [-], 285158113458  [UniProt]  [KEGG]conserved hypothetical protein
14Franean1_63147667317..7668648 [+], 1332158113459  [UniProt]  [KEGG]helix-turn-helix domain protein
15Franean1_63157668721..7669401 [+], 681158113460  [UniProt]  [KEGG]conserved hypothetical protein
16Franean1_63167669657..7670205 [+], 549158113461  [UniProt]  [KEGG]hypothetical protein
17Franean1_63177670206..7671864 [+], 1659158113462  [UniProt]  [KEGG]hypothetical protein
18Franean1_63187672252..7673349 [-], 1098158113463  [UniProt]  [KEGG]hypothetical protein
19Franean1_63197674205..7675467 [+], 1263158113464  [UniProt]  [KEGG]transposase IS4 family protein
20Franean1_63207675789..7676151 [-], 363158113465  [UniProt]  [KEGG]conserved hypothetical proteinTA
21Franean1_63217676148..7676387 [-], 240158113466  [UniProt]  [KEGG]protein of unknown function DUF433TA
22Franean1_63227677440..7678702 [-], 1263158113467  [UniProt]  [KEGG]transposase IS4 family protein
23Franean1_63237680083..7680802 [+], 720158113468 Phytanoyl-CoA dioxygenase
24Franean1_63247680812..7681795 [+], 984158113469 hypothetical protein
25Franean1_63257681761..7682972 [+], 1212158113470 conserved hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer
regulation Gene may play role in regulation of transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins20Fasta
(1) te Poele EM; Bolhuis H; Dijkhuizen L (2008). Actinomycete integrative and conjugative elements. Antonie Van Leeuwenhoek. 94(1):127-43. [PudMed:18523858]