ICEberg
ICEberg
ICEberg ID220
NameICE-GI2
FamilyICEclc
OrganismBordetella petrii DSM 12804
Size (bp)143430
GC content [Genome] (%)61 [66]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAM902716 (complete ICE sequence in this genome)
Replicon chromosome (5287950 bp, Project:28135) [NC_010170]
Genome coordinates1350129..1493558
Link to view genome context of this ICE in the genome browser
experimental This is a ICE derived from experimental literature.
Complete gene list of ICE-GI2 form AM902716
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1Bpet12831345519..1347024 [+], 1506163259317 putative long-chain-fatty-acid--CoA ligase
2Bpet12841347021..1347806 [+], 786163259318 putative Citrate synthase
3Bpet12851347809..1348561 [+], 753163259319 putative oxidoreductase
4Bpet12861348522..1349400 [+], 879163259320 probable short chain dehydrogenase
5Bpet12871349423..1350037 [-], 615163259321 -
6Bpet12881350756..1351655 [+], 900163259322  [UniProt]  [KEGG]transcriptional regulator, LysR-family
7Bpet12891352135..1352347 [+], 213163259323  [UniProt]  [KEGG]putative transcriptional regulator (phage-related)VF
8parA21352385..1353248 [+], 864163259324  [UniProt]  [KEGG]conserved hypothetical protein
9ig_06091353232..1353489 [+], 258163259325  [UniProt] conserved hypothetical protein
10Bpet12911353482..1355206 [+], 1725163259326  [UniProt]  [KEGG]conserved hypothetical protein
11Bpet12921355218..1355778 [+], 561163259327  [UniProt]  [KEGG]conserved hypothetical protein
12Bpet12931355781..1356971 [+], 1191163259328  [UniProt]  [KEGG]hypothetical protein
13Bpet12941357574..1358395 [+], 822163259329  [UniProt]  [KEGG]conserved hypothetical protein
14Bpet12951358392..1358922 [+], 531163259330  [UniProt]  [KEGG]probable transcriptional regulator
15Bpet12961358919..1359878 [+], 960163259331  [UniProt]  [KEGG]adenine DNA methyltransferase protein
16ssb21359923..1360366 [+], 444163259332  [UniProt]  [KEGG]-
17top3A1360772..1361959 [+], 1188163259333 pseudogene
18tnp51362023..1362310 [+], 288163259334  [UniProt]  [KEGG]transposaseVF
19Bpet13001362307..1363197 [+], 891163259335  [UniProt]  [KEGG]probable transposaseVF
20top3B1363278..1364081 [+], 804163259336 pseudogene
21Bpet13021364635..1365204 [+], 570163259337  [UniProt]  [KEGG]putative C-5 cytosine-specific DNA methylase
22Bpet13031365410..1366549 [+], 1140163259338  [UniProt]  [KEGG]integrase/recombinase
23Bpet13041366549..1367544 [+], 996163259339  [UniProt]  [KEGG]integrase/recombinase
24Bpet13051367537..1368586 [+], 1050163259340  [UniProt]  [KEGG]putative integrase/recombinase
25Bpet13061368705..1369904 [+], 1200163259341  [UniProt]  [KEGG]DNA-cytosine methyltransferase
26Bpet13071370007..1370522 [-], 516163259342  [UniProt]  [KEGG]probable acetyltransferaseTA
27Bpet13081370522..1370800 [-], 279163259343  [UniProt]  [KEGG]conserved hypothetical proteinTA
28Bpet13091371604..1372317 [+], 714163259344  [UniProt]  [KEGG]hypothetical protein predicted by Glimmer/Critica
29Bpet13101372475..1373446 [+], 972163259345  [UniProt]  [KEGG]hypothetical protein predicted by Glimmer/Critica
30Bpet13111373700..1374512 [+], 813163259346  [UniProt]  [KEGG]conserved hypothetical protein
31Bpet13121374834..1375199 [+], 366163259347  [UniProt]  [KEGG]conserved hypothetical protein
32Bpet13131375305..1375646 [+], 342163259348  [UniProt]  [KEGG]conserved plasmid protein
33Bpet13141376054..1376602 [+], 549163259349  [UniProt]  [KEGG]hypothetical protein
34Bpet13151376709..1377317 [+], 609163259350  [UniProt]  [KEGG]hypothetical protein
35Bpet13161377395..1377736 [+], 342163259351  [UniProt]  [KEGG]hypothetical protein predicted by Glimmer/Critica
36Bpet13171377971..1378798 [+], 828163259352  [UniProt]  [KEGG]Hypothetical protein (o273)VF
37Bpet13181378936..1379586 [+], 651163259353  [UniProt]  [KEGG]conserved hypothetical protein
38Bpet13191379652..1380758 [+], 1107163259354  [UniProt]  [KEGG]hypothetical protein predicted by Glimmer/Critica
39Bpet13201380838..1381164 [+], 327163259355  [UniProt]  [KEGG]hypothetical protein predicted by Glimmer/Critica
40Bpet13211381254..1381559 [+], 306163259356  [UniProt]  [KEGG]hypothetical protein predicted by Glimmer/Critica
41Bpet13221381685..1381996 [+], 312163259357  [UniProt]  [KEGG]hypothetical protein
42Bpet13231382099..1384372 [+], 2274163259358  [UniProt]  [KEGG]conserved plasmid related protein
43Bpet13241384388..1385263 [-], 876163259359  [UniProt]  [KEGG]putative DNA-binding protein
44Bpet13251385419..1386660 [+], 1242163259360  [UniProt]  [KEGG]5-aminolevulinic acid synthase
45Bpet13261386661..1387161 [+], 501163259361  [UniProt]  [KEGG]probable acetyltransferase
46Bpet13271387158..1388225 [+], 1068163259362  [UniProt]  [KEGG]putative oxidoreductase
47asnB1388255..1390108 [+], 1854163259363  [UniProt]  [KEGG]asparagine synthetase, glutamine-hydrolyzing
48Bpet13291390130..1391332 [+], 1203163259364  [UniProt]  [KEGG]MFS transporter
49Bpet13301392232..1393371 [+], 1140163259365  [UniProt]  [KEGG]putative monooxygenase
50Bpet13311393394..1395133 [+], 1740163259366  [UniProt]  [KEGG]2,4-dichlorophenol 6-monooxygenase
51Bpet13321395199..1395825 [+], 627163259367  [UniProt]  [KEGG]transcriptional regulator, TetR-family
52Bpet13331395907..1397118 [+], 1212163259368  [UniProt]  [KEGG]permease of the major facilitator family
53Bpet13341397137..1397862 [+], 726163259369  [UniProt]  [KEGG]hypothetical Protein
54Bpet13351397873..1398595 [-], 723163259370  [UniProt]  [KEGG]conserved hypothetical protein
55Bpet13361398784..1399206 [-], 423163259371  [UniProt]  [KEGG]conserved hypothetical protein, fragment
56tnp61399285..1399572 [+], 288163259372  [UniProt]  [KEGG]transposaseVF
57Bpet13381399569..1400459 [+], 891163259373  [UniProt]  [KEGG]probable transposaseVF
58Bpet13391400498..1400833 [-], 336163259374  [UniProt]  [KEGG]hypothetical protein predicted by Glimmer/Critica
59Bpet13401400898..1401554 [-], 657163259375  [UniProt]  [KEGG]Threonine efflux protein.
60Bpet13411401556..1402326 [-], 771163259376  [UniProt]  [KEGG]conserved hypothetical protein
61alaS11402426..1403058 [-], 633163259377  [UniProt]  [KEGG]alanyl-tRNA synthetase domain protein
62Bpet13431403154..1404140 [+], 987163259378  [UniProt]  [KEGG]transcriptional regulator, LysR-family
63Bpet13441404231..1404815 [+], 585163259379  [UniProt]  [KEGG]putative lipoproteinVF
64Bpet13451404812..1405459 [+], 648163259380  [UniProt]  [KEGG]putative membrane protein
65Bpet13461405469..1406209 [+], 741163259381  [UniProt]  [KEGG]conserved protein, putatively exported
66Bpet13471406194..1406778 [+], 585163259382  [UniProt]  [KEGG]conserved exported protein
67Bpet13481406775..1407326 [+], 552163259383  [UniProt]  [KEGG]putative secreted protein
68Bpet13491407337..1409505 [+], 2169163259384  [UniProt]  [KEGG]conserved hypothetical protein
69Bpet13501409502..1410251 [+], 750163259385  [UniProt]  [KEGG]putative membrane protein
70csrA1410532..1410729 [+], 198163259386  [UniProt]  [KEGG]carbon storage regulatorVF
71Bpet13521410780..1412069 [-], 1290163259387  [UniProt]  [KEGG]conserved hypothetical proteinTA
72Bpet13531412066..1412434 [-], 369163259388  [UniProt]  [KEGG]putative DNA-binding proteinTA
73Bpet13541412789..1413145 [+], 357163259389  [UniProt]  [KEGG]putative secreted protein
74Bpet13551413142..1413375 [+], 234163259390  [UniProt]  [KEGG]-
75Bpet13561413392..1413757 [+], 366163259391  [UniProt]  [KEGG]conserved hypothetical protein
76Bpet13571413767..1414168 [+], 402163259392  [UniProt]  [KEGG]putative membrane protein
77Bpet13581414165..1414857 [+], 693163259393  [UniProt]  [KEGG]conserved hypothetical protein
78Bpet13591414854..1415762 [+], 909163259394  [UniProt]  [KEGG]conserved hypothetical protein
79Bpet13601415752..1417200 [+], 1449163259395  [UniProt]  [KEGG]putative exported protein
80Bpet13611417181..1417615 [+], 435163259396  [UniProt]  [KEGG]putative lipoprotein
81Bpet13621417615..1420494 [+], 2880163259397  [UniProt]  [KEGG]conserved hypothetical protein
82Bpet13631420550..1422661 [-], 2112163259398  [UniProt]  [KEGG]probable signalling protein
83Bpet13641423188..1423943 [+], 756163259399  [UniProt]  [KEGG]conserved hypothetical protein
84Bpet13651423971..1424603 [-], 633163259400  [UniProt]  [KEGG]conserved hypothetical proteinVF
85Bpet13661425030..1426340 [-], 1311163259401  [UniProt]  [KEGG]conserved hypothetical proteinVF
86Bpet13671426282..1427076 [-], 795163259402  [UniProt]  [KEGG]transcriptional regulator, TetR-family
87Bpet13681427315..1429882 [-], 2568163259403  [UniProt]  [KEGG]probable signalling protein
88Bpet13691430684..1432189 [+], 1506163259404  [UniProt]  [KEGG]-
89Bpet13701432239..1433117 [-], 879163259405  [UniProt]  [KEGG]transcriptional regulator, LysR-family
90Bpet13711433241..1434017 [+], 777163259406  [UniProt]  [KEGG]hypothetical protein
91rhtB21434074..1434691 [+], 618163259407  [UniProt]  [KEGG]putative amino acid efflux transmembrane protein
92Bpet13731434704..1435333 [+], 630163259408  [UniProt]  [KEGG]-
93Bpet13741435548..1435997 [+], 450163259409  [UniProt]  [KEGG]conserved hypothetical protein
94Bpet13751435994..1436938 [+], 945163259410  [UniProt]  [KEGG]conserved hypothetical protein
95Bpet13761436940..1438346 [+], 1407163259411  [UniProt]  [KEGG]conserved hypothetical protein
96Bpet13771438343..1438693 [+], 351163259412  [UniProt]  [KEGG]conserved hypothetical protein
97Bpet13781438707..1440224 [+], 1518163259413  [UniProt]  [KEGG]conserved hypothetical protein
98Bpet13791440233..1440610 [-], 378163259414  [UniProt]  [KEGG]hypothetical protein
99Bpet13801440673..1441341 [-], 669163259415  [UniProt]  [KEGG]conserved hypothetical protein
100Bpet13811441406..1441654 [-], 249163259416  [UniProt]  [KEGG]hypothetical protein predicted by Glimmer/Critica
101Bpet13821442143..1443972 [+], 1830163259417  [UniProt]  [KEGG]putative helicase
102Bpet13831444018..1445601 [-], 1584163259418  [UniProt]  [KEGG]conserved hypothetical protein
103Bpet13841445598..1446872 [-], 1275163259419  [UniProt]  [KEGG]conserved hypothetical protein
104benE1446869..1448050 [-], 1182163259420  [UniProt]  [KEGG]benzoate membrane transport protein
105Bpet13861448078..1449436 [-], 1359163259421  [UniProt]  [KEGG]putative n-hydroxybenzoate transporter
106areB1449517..1450647 [-], 1131163259422  [UniProt]  [KEGG]Aryl-alcohol dehydrogenase
107Bpet13881450658..1452124 [-], 1467163259423  [UniProt]  [KEGG]benzaldehyde dehydrogenase II
108Bpet13891452184..1452570 [-], 387163259424  [UniProt]  [KEGG]Hypothetical UPF0065 protein in clcB-clcD intergenic region precursor.
109Bpet13901452695..1452973 [-], 279163259425  [UniProt]  [KEGG]methylmuconolactone isomerase
110Bpet13911453007..1453819 [-], 813163259426  [UniProt]  [KEGG]3-oxoadipate enol-lactone hydrolase
111Bpet13921453830..1454108 [-], 279163259427  [UniProt]  [KEGG]putative thiolase, fragment
112Bpet13931454092..1454286 [-], 195163259428  [UniProt]  [KEGG]3-oxoadipate CoA-transferase subunit A, fragment
113benK1454310..1455671 [-], 1362163259429  [UniProt]  [KEGG]benzoate transport protein, putative
114Bpet13951455709..1456125 [-], 417163259430  [UniProt]  [KEGG]conserved hypothetical protein
115benD1456182..1456955 [-], 774163259431  [UniProt]  [KEGG]cis-1,2-dihydroxycyclohexa-3, 5-diene-1-carboxylate dehydrogenase,(cis-1,2-dihydroxy-3, 4-cyclohexadiene-1-carboxylate dehydrogenase)
116benC1456968..1457993 [-], 1026163259432  [UniProt]  [KEGG]Ferredoxin--NAD(+) reductase
117benB1458011..1458511 [-], 501163259433  [UniProt]  [KEGG]benzoate 1,2-dioxygenase
118benA1458508..1459872 [-], 1365163259434  [UniProt]  [KEGG]Benzoate 1,2-dioxygenase alpha subunit
119catA21459999..1460934 [-], 936163259435  [UniProt]  [KEGG]catechol 1,2-dioxygenase
120catB11460977..1462197 [-], 1221163259436  [UniProt]  [KEGG]chloromuconate cycloisomerase
121catR11462273..1463271 [+], 999163259437  [UniProt]  [KEGG]transcriptional regulator catR
122Bpet14031463665..1464102 [+], 438163259438  [UniProt]  [KEGG]putative transposase
123Bpet14041464072..1464458 [+], 387163259439  [UniProt]  [KEGG]transposase IS4 family
124Bpet14051464541..1464735 [-], 195163259440  [UniProt]  [KEGG]putative transposase A
125Bpet14061464809..1465105 [-], 297163259441  [UniProt]  [KEGG]putative transposaseVF
126Bpet14071465132..1465323 [+], 192163259442  [UniProt]  [KEGG]conserved hypothetical protein
127Bpet14081465555..1466010 [+], 456163259443  [UniProt]  [KEGG]conserved hypothetical protein
128Bpet14091466321..1468411 [+], 2091163259444  [UniProt]  [KEGG]transposase
129Bpet14101468264..1469049 [-], 786163259445  [UniProt]  [KEGG]integrase, catalytic domainVF
130Bpet14111469103..1469429 [-], 327163259446  [UniProt]  [KEGG]transposase IS911 HTH and LZ regionVF
131Bpet14121469516..1470343 [-], 828163259447  [UniProt]  [KEGG]hypothetical protein
132Bpet14131470523..1470714 [-], 192163259448  [UniProt]  [KEGG]conserved hypothetical protein
133Bpet14141470755..1471189 [-], 435163259449  [UniProt]  [KEGG]conserved hypothetical protein
134nthB1471192..1471848 [-], 657163259450  [UniProt]  [KEGG]nitrile hydratase subunit beta (Nitrilase) (NHase)
135nthA1471859..1472620 [-], 762163259451  [UniProt]  [KEGG]nitrile hydratase alpha subunit
136Bpet14171472754..1474160 [-], 1407163259452  [UniProt]  [KEGG]glutamyl-tRNA(Gln) amidotransferase subunit A
137Bpet14181474157..1474363 [-], 207163259453  [UniProt]  [KEGG]hypothetical protein predicted by Glimmer/Critica
138Bpet14191474894..1475280 [+], 387163259454  [UniProt]  [KEGG]transposase IS4 family
139Bpet14201475915..1477492 [-], 1578163259455  [UniProt]  [KEGG]-
140Bpet14211478386..1478928 [+], 543163259456  [UniProt]  [KEGG]hypothetical protein predicted by Glimmer/Critica
141Bpet14221479015..1479320 [+], 306163259457  [UniProt]  [KEGG]hypothetical protein predicted by Glimmer/Critica
142Bpet14231479382..1479675 [-], 294163259458  [UniProt]  [KEGG]hypothetical protein predicted by Glimmer/Critica
143Bpet14241480368..1480523 [+], 156163259459  [UniProt]  [KEGG]IS5 family element, transposase orfA
144Bpet14251480737..1481072 [+], 336163259460  [UniProt]  [KEGG]3-oxoacid CoA-transferase subunit A, fragment
145Bpet14261481151..1481471 [+], 321163259461  [UniProt]  [KEGG]3-oxoacid CoA-transferase subunit B, fragment
146Bpet14271481766..1482545 [+], 780163259462  [UniProt]  [KEGG]transcriptional regulatory protein
147Bpet14281482530..1483702 [-], 1173163259463  [UniProt]  [KEGG]putative salicylate hydroxylase
148Bpet14291483719..1484573 [-], 855163259464  [UniProt]  [KEGG]2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
149Bpet14301484603..1485646 [-], 1044163259465  [UniProt]  [KEGG]putative gentisate 1,2-dioxygenase
150Bpet14311485814..1487190 [+], 1377163259466  [UniProt]  [KEGG]putative 4-hydroxybenzoate transporter
151tnp71487225..1487650 [-], 426163259467  [UniProt]  [KEGG]putative resolvase
152Bpet14331488052..1488378 [-], 327163259468  [UniProt]  [KEGG]putative transcriptional regulator
153Bpet14341488485..1489135 [+], 651163259469  [UniProt]  [KEGG]probable transcriptional regulator
154Bpet14351489427..1490008 [+], 582163259470  [UniProt]  [KEGG]transcriptional regulator, TetR-family
155Bpet14361490093..1491262 [+], 1170163259471  [UniProt]  [KEGG]putative Transmembrane efflux protein of the MFS type
156intB131491479..1493314 [-], 1836163259472  [UniProt]  [KEGG]phage-related integrase
157Bpet14381494345..1495100 [+], 756163259473  [UniProt]  [KEGG]conserved hypothetical protein
158alpA31495220..1495432 [+], 213163259474  [UniProt]  [KEGG]predicted transcriptional regulator (phage-related)VF
159parA31495476..1496351 [+], 876163259475  [UniProt]  [KEGG]hypothetical protein
160Bpet14411496335..1496592 [+], 258163259476  [UniProt]  [KEGG]conserved hypothetical protein
161Bpet14421496585..1498237 [+], 1653163259477  [UniProt]  [KEGG]conserved hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins151Fasta
(1) Lechner M; Schmitt K; Bauer S; Hot D; Hubans C; Levillain E; Locht C; Lemoine Y; Gross R (2009). Genomic island excisions in Bordetella petrii. BMC Microbiol. 9:141. [PudMed:19615092] experimental
 
experimental experimental literature