ICEberg
ICEberg ID221
NameICE-GI3
FamilyICEclc
OrganismBordetella petrii DSM 12804
Size (bp)102111
GC content [Genome] (%)63 [66]
Insertion sitetRNA-Gly (tRNA-11)
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAM902716 (complete ICE sequence in this genome)
Replicon chromosome (5287950 bp, Project:28135) [NC_010170]
Genome coordinates1493541..1595651
Link to view genome context of this ICE in the genome browser
experimental This is a ICE derived from experimental literature.
Complete gene list of ICE-GI3 form AM902716
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1Bpet14351489427..1490008 [+], 582163259470  [UniProt]  [KEGG]transcriptional regulator, TetR-family
2Bpet14361490093..1491262 [+], 1170163259471  [UniProt]  [KEGG]putative Transmembrane efflux protein of the MFS type
3intB131491479..1493314 [-], 1836163259472  [UniProt]  [KEGG]phage-related integrase
4Bpet14381494345..1495100 [+], 756163259473  [UniProt]  [KEGG]conserved hypothetical protein
5alpA31495220..1495432 [+], 213163259474  [UniProt]  [KEGG]predicted transcriptional regulator (phage-related)VF
6parA31495476..1496351 [+], 876163259475  [UniProt]  [KEGG]hypothetical protein
7Bpet14411496335..1496592 [+], 258163259476  [UniProt]  [KEGG]conserved hypothetical protein
8Bpet14421496585..1498237 [+], 1653163259477  [UniProt]  [KEGG]conserved hypothetical protein
9Bpet14431498253..1498813 [+], 561163259478  [UniProt]  [KEGG]conserved hypothetical protein
10Bpet14441498817..1500061 [+], 1245163259479  [UniProt]  [KEGG]conserved hypothetical protein
11Bpet14451500392..1501171 [+], 780163259480  [UniProt]  [KEGG]conserved hypothetical protein
12Bpet14461501168..1501695 [+], 528163259481  [UniProt]  [KEGG]conserved hypothetical protein
13ssb31501769..1502209 [+], 441163259482  [UniProt]  [KEGG]-
14topB31502488..1504500 [+], 2013163259483  [UniProt]  [KEGG]DNA topoisomerase III
15Bpet14491505037..1505642 [+], 606163259484  [UniProt]  [KEGG]putative DNA-cytosine methyltransferase
16Bpet14501505848..1506987 [+], 1140163259485  [UniProt]  [KEGG]integrase/recombinase
17Bpet14511506987..1507982 [+], 996163259486  [UniProt]  [KEGG]integrase/recombinase
18Bpet14521508109..1508999 [-], 891163259487  [UniProt]  [KEGG]probable transposaseVF
19tnp81508996..1509283 [-], 288163259488  [UniProt]  [KEGG]transposaseVF
20int11509356..1510309 [+], 954163259489  [UniProt]  [KEGG]putative integrase/recombinase
21Bpet14551510428..1511417 [+], 990163259490  [UniProt]  [KEGG]DNA-cytosine methyltransferase
22Bpet14561511662..1512219 [+], 558163259491  [UniProt]  [KEGG]conserved hypothetical protein
23Bpet14571512376..1512762 [+], 387163259492  [UniProt]  [KEGG]conserved hypothetical protein
24Bpet14581512784..1513176 [+], 393163259493  [UniProt]  [KEGG]conserved hypothetical protein
25Bpet14591513349..1514035 [+], 687163259494  [UniProt]  [KEGG]conserved hypothetical protein
26Bpet14601514115..1514852 [+], 738163259495  [UniProt]  [KEGG]conserved hypothetical protein
27Bpet14611514950..1515228 [+], 279163259496  [UniProt]  [KEGG]conserved hypothetical protein
28Bpet14621515302..1516243 [+], 942163259497  [UniProt]  [KEGG]conserved hypothetical protein
29Bpet14631516254..1517144 [-], 891163259498  [UniProt]  [KEGG]probable transposaseVF
30tnp91517141..1517428 [-], 288163259499  [UniProt]  [KEGG]transposaseVF
31Bpet14651517756..1518109 [+], 354163259500  [UniProt]  [KEGG]conserved hypothetical protein
32Bpet14661518255..1519097 [+], 843163259501  [UniProt]  [KEGG]conserved hypothetical protein
33Bpet14671519151..1519294 [-], 144163259502  [UniProt]  [KEGG]Potential Pseudomonas putida clc transposon
34Bpet14681519875..1520792 [+], 918163259503  [UniProt]  [KEGG]hypothetical protein
35Bpet14691520850..1521539 [+], 690163259504  [UniProt]  [KEGG]conserved hypothetical protein
36Bpet14701521635..1521967 [+], 333163259505  [UniProt]  [KEGG]conserved hypothetical protein
37Bpet14711522064..1522471 [+], 408163259506  [UniProt]  [KEGG]-
38Bpet14721522488..1522748 [+], 261163259507  [UniProt]  [KEGG]hypothetical protein predicted by Glimmer/Critica
39Bpet14731522825..1523475 [+], 651163259508  [UniProt]  [KEGG]conserved hypothetical protein
40Bpet14741523540..1524649 [+], 1110163259509  [UniProt]  [KEGG]conserved hypothetical protein
41ltrA21525670..1527490 [+], 1821163259510  [UniProt]  [KEGG]Mobile mitochondrial group II intron of COX1 which is involved in pre-mRNA splicing and in deletion of introns from mitochondrial DNA
42Bpet14761527718..1529565 [+], 1848163259511  [UniProt]  [KEGG]conserved plasmid related protein
43Bpet14771529679..1530548 [+], 870163259512  [UniProt]  [KEGG]hypothetical protein predicted by Glimmer/Critica
44Bpet14781530709..1531308 [+], 600163259513  [UniProt]  [KEGG]putative secreted proteinVF
45Bpet14791531305..1531955 [+], 651163259514  [UniProt]  [KEGG]putative membrane protein
46Bpet14801531970..1532689 [+], 720163259515  [UniProt]  [KEGG]conserved protein, putatively exported
47Bpet14811532671..1533261 [+], 591163259516  [UniProt]  [KEGG]conserved exported protein
48Bpet14821533258..1533806 [+], 549163259517  [UniProt]  [KEGG]conserved hypothetical protein
49Bpet14831533811..1535997 [+], 2187163259518  [UniProt]  [KEGG]putative plasmid-transfer-protein
50Bpet14841535994..1536743 [+], 750163259519  [UniProt]  [KEGG]putative Membrane protein
51Bpet14851536780..1537184 [-], 405163259520  [UniProt]  [KEGG]conserved hypothetical protein
52Bpet14861537370..1537753 [+], 384163259521  [UniProt]  [KEGG]putative membrane protein
53Bpet14871537750..1537983 [+], 234163259522  [UniProt]  [KEGG]conserved hypothetical protein
54Bpet14881537994..1538359 [+], 366163259523  [UniProt]  [KEGG]conserved hypothetical protein
55Bpet14891538372..1538782 [+], 411163259524  [UniProt]  [KEGG]putative membrane protein
56Bpet14901538779..1539471 [+], 693163259525  [UniProt]  [KEGG]conserved hypothetical protein
57Bpet14911539468..1540400 [+], 933163259526  [UniProt]  [KEGG]putative secreted protein
58Bpet14921540390..1541808 [+], 1419163259527  [UniProt]  [KEGG]putative exported protein
59Bpet14931541789..1542229 [+], 441163259528  [UniProt]  [KEGG]putative lipoprotein
60bp050705_PS_021542229..1546381 [+], 4153pseudogene -
61Bpetpseudo_041542229..1543317 [+], 1089163259529 pseudogene
62tnp101543350..1543637 [+], 288163259530  [UniProt]  [KEGG]transposaseVF
63Bpet14951543634..1544524 [+], 891163259531  [UniProt]  [KEGG]probable transposaseVF
64Bpetpseudo_051544570..1546381 [+], 1812163259532 pseudogene
65Bpet14961546395..1547159 [+], 765163259533  [UniProt]  [KEGG]putative protein-disulfide isomerase
66Bpet14971547343..1547789 [+], 447163259534  [UniProt]  [KEGG]putative DNA repair protein RadC
67Bpet14981547845..1549104 [+], 1260163259535  [UniProt]  [KEGG]putative integrase/recombinase
68Bpet14991549101..1550093 [+], 993163259536  [UniProt]  [KEGG]putative integrase/recombinase
69Bpet15001550090..1551100 [+], 1011163259537  [UniProt]  [KEGG]putative integrase/recombinase
70Bpet15011551600..1552046 [+], 447163259538  [UniProt]  [KEGG]conserved hypothetical protein
71Bpet15021551923..1552990 [+], 1068163259539  [UniProt]  [KEGG]conserved hypothetical protein
72Bpet15031553000..1554397 [+], 1398163259540  [UniProt]  [KEGG]conserved hypothetical protein
73Bpet15041554394..1554753 [+], 360163259541  [UniProt]  [KEGG]hypothetical protein predicted by Glimmer/Critica
74Bpet15051554769..1556286 [+], 1518163259542  [UniProt]  [KEGG]conserved hypothetical protein
75Bpet15061556300..1556677 [-], 378163259543  [UniProt]  [KEGG]putative transposon
76Bpet15071556705..1557163 [-], 459163259544  [UniProt]  [KEGG]conserved hypothetical proteinTA
77Bpet15081557163..1557480 [-], 318163259545  [UniProt]  [KEGG]probable suppressor proteinTA
78Bpet15091557786..1559633 [+], 1848163259546  [UniProt]  [KEGG]putative helicase
79Bpet15101559933..1560112 [-], 180163259547  [UniProt]  [KEGG]putative transposon
80Bpet15111560148..1560621 [-], 474163259548  [UniProt]  [KEGG]putative transcriptional regulator
81Bpet15121560803..1561570 [-], 768163259549  [UniProt]  [KEGG]similar to glucose 1-dehydrogenase
82Bpet15131561652..1562170 [-], 519163259550  [UniProt]  [KEGG]Biphenyl dioxygenase small subunit
83Bpetpseudo_061562213..1562752 [-], 540163259551 pseudogene
84Bpet15141562792..1564339 [-], 1548163259552  [UniProt]  [KEGG]putative transposase
85Bpet15151564448..1565650 [-], 1203163259553  [UniProt]  [KEGG]probable dihydrolipoamide dehydrogenase
86Bpet15161565629..1566108 [-], 480163259554  [UniProt]  [KEGG]Putative acyl-CoA thioester hydrolase
87Bpet15171566127..1567602 [-], 1476163259555  [UniProt]  [KEGG]probable glutathione reductase
88Bpet15181567491..1568060 [-], 570163259556  [UniProt]  [KEGG]probable glutathione S-transferase
89gst21568129..1568749 [-], 621163259557  [UniProt]  [KEGG]putative glutathione transferase
90Bpet15201568763..1569353 [-], 591163259558  [UniProt]  [KEGG]putative enzyme
91Bpet15211569368..1569670 [-], 303163259559  [UniProt]  [KEGG]hypothetical protein predicted by Glimmer/Critica
92Bpet15221569683..1569988 [-], 306163259560  [UniProt]  [KEGG]conserved hypothetical protein
93Bpet15231570186..1572237 [-], 2052163259561  [UniProt]  [KEGG]transposition-related fusion-proteinVF
94Bpet15241572677..1573705 [-], 1029163259562  [UniProt]  [KEGG]glycosyltransferase
95Bpet15251573702..1574760 [-], 1059163259563  [UniProt]  [KEGG]glycosyltransferase
96Bpet15261574753..1575355 [-], 603163259564  [UniProt]  [KEGG]acetyltransferase
97Bpet15271575339..1576721 [-], 1383163259565  [UniProt]  [KEGG]conserved hypothetical protein
98Bpet15281576782..1577165 [-], 384163259566  [UniProt]  [KEGG]putative transposase
99Bpet15291577568..1579115 [-], 1548163259567  [UniProt]  [KEGG]putative transposase
100Bpet15301579174..1579845 [+], 672163259568  [UniProt]  [KEGG]ISSod11, transposase
101Bpet15311580078..1580320 [+], 243163259569  [UniProt]  [KEGG]conserved hypothetical protein
102Bpet15321580338..1580688 [+], 351163259570  [UniProt]  [KEGG]conserved hypothetical protein
103clcR1580832..1581716 [-], 885163259571  [UniProt]  [KEGG]transcriptional regulator clcR
104clcA1581886..1582668 [+], 783163259572  [UniProt]  [KEGG]catechol 1,2-dioxygenase
105catB21582665..1583777 [+], 1113163259573  [UniProt]  [KEGG]muconate cycloisomerase I
106bug361583804..1584787 [+], 984163259574  [UniProt]  [KEGG]putative secreted protein
107Bpet15371584809..1585519 [+], 711163259575  [UniProt]  [KEGG]probable carboxymethylenebutenolidase
108Bpet15381585516..1586574 [+], 1059163259576  [UniProt]  [KEGG]maleylacetate reductase
109Bpet15391586690..1587673 [+], 984163259577  [UniProt]  [KEGG]transcriptional regulator, AraC family
110Bpet15401588469..1589731 [+], 1263163259578  [UniProt]  [KEGG]probable Ring hydroxylating alpha subunit
111Bpet15411589734..1590213 [+], 480163259579  [UniProt]  [KEGG]conserved hypothetical protein
112Bpet15421590311..1591288 [+], 978163259580  [UniProt]  [KEGG]Vanillate O-demethylase oxidoreductase
113Bpet15431591493..1592878 [+], 1386163259581  [UniProt]  [KEGG]benzoate transport protein, putative
114Bpet15441592784..1593284 [+], 501163259582  [UniProt]  [KEGG]hypothetical protein predicted by Glimmer/Critica
115intB131593493..1595466 [-], 1974163259583  [UniProt]  [KEGG]phage-related integrase
116murB1595859..1596920 [+], 1062163259584 UDP-N-acetylmuramate dehydrogenase
117dapB1596967..1597758 [-], 792163259585 -
118omlA1597819..1598547 [-], 729163259586 outer membrane lipoprotein OmlA
119fur1598708..1599130 [+], 423163259587 ferric uptake regulation protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins111Fasta
(1) Lechner M; Schmitt K; Bauer S; Hot D; Hubans C; Levillain E; Locht C; Lemoine Y; Gross R (2009). Genomic island excisions in Bordetella petrii. BMC Microbiol. 9:141. [PudMed:19615092] experimental
 
experimental experimental literature