ICEberg
ICEberg ID222
NameICE-GI6
FamilyICEclc
OrganismBordetella petrii DSM 12804
Size (bp)159097
GC content [Genome] (%)61 [66]
Insertion sitetRNA-Gly (tRNA-44)
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAM902716 (complete ICE sequence in this genome)
Replicon chromosome (5287950 bp, Project:28135) [NC_010170]
Genome coordinates4417743..4576839
Link to view genome context of this ICE in the genome browser
experimental This is a ICE derived from experimental literature.
Complete gene list of ICE-GI6 form AM902716
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1pntA24412947..4414566 [+], 1620163262216 NAD(P) transhydrogenase subunit alpha
2pntB24414595..4416010 [+], 1416163262217 NAD(P) transhydrogenase subunit beta
3Bpet41724416066..4417025 [-], 960163262218 transcriptional regulator, LysR-family
4Bpet41734417207..4417665 [+], 459163262219 transcriptional regulator, AsnC family
5Bpet41744417928..4418830 [-], 903163262220  [UniProt]  [KEGG]transcriptional regulator, LysR-family
6Bpet41754419232..4420140 [+], 909163262221  [UniProt]  [KEGG]-
7Bpet41764420153..4423053 [+], 2901163262222  [UniProt]  [KEGG]DNA-dependent ATPase, SNF2 family protein
8Bpet41774423067..4423618 [+], 552163262223  [UniProt]  [KEGG]hypothetical protein
9Bpet41784423618..4423887 [+], 270163262224  [UniProt]  [KEGG]-
10Bpet41794424048..4425028 [+], 981163262225  [UniProt]  [KEGG]ISPssy, transposase
11lpsJ24425176..4425814 [+], 639163262226  [UniProt]  [KEGG]3-oxoacid CoA-transferase subunit B
12fadA94425859..4427028 [+], 1170163262227  [UniProt]  [KEGG]-
13Bpet41824427191..4427580 [-], 390163262228  [UniProt]  [KEGG]transposase IS4 family
14Bpet41834427550..4427957 [-], 408163262229  [UniProt]  [KEGG]putative transposase
15Bpet41844428521..4429150 [-], 630163262230  [UniProt]  [KEGG]Putative HTH-type transcriptional regulator, AcrR-family
16Bpet41854429152..4429826 [-], 675163262231  [UniProt]  [KEGG]transcriptional regulator, TetR-family
17Bpet41864429847..4430698 [-], 852163262232  [UniProt]  [KEGG]conserved hypothetical protein
18cusC24430706..4432169 [-], 1464163262233  [UniProt]  [KEGG]probable outer membrane efflux proteinVF
19Bpet41884432166..4435297 [-], 3132163262234  [UniProt]  [KEGG]AcrB/AcrD/AcrF family protein
20Bpet41894435307..4436482 [-], 1176163262235  [UniProt]  [KEGG]multidrug resistance protein
21Bpet41904436701..4437291 [+], 591163262236  [UniProt]  [KEGG]transcriptional regulator, TetR family
22Bpet41914437349..4438071 [+], 723163262237  [UniProt]  [KEGG]transcriptional regulator, TetR-family
23Bpet41924438117..4438551 [-], 435163262238  [UniProt]  [KEGG]hypothetical protein predicted by Glimmer/Critica
24Bpet41934438618..4439022 [-], 405163262239  [UniProt]  [KEGG]Conserved secreted protein, UPF0065 family
25Bpet41944439208..4440581 [-], 1374163262240  [UniProt]  [KEGG]hypothetical protein
26Bpet41954440617..4441396 [-], 780163262241  [UniProt]  [KEGG]2-hydroxymuconic semialdehyde hydrolase
27Bpet41964441393..4442298 [-], 906163262242  [UniProt]  [KEGG]fumarylacetoacetate hydrolase family protein
28Bpet41974442401..4443177 [+], 777163262243  [UniProt]  [KEGG]transcriptional regulator, GntR-family
29Bpet41984443235..4444233 [+], 999163262244  [UniProt]  [KEGG]aldo/keto reductase
30Bpet41994444256..4445074 [-], 819163262245  [UniProt]  [KEGG]putative exported protein
31Bpet42004445138..4445866 [-], 729163262246  [UniProt]  [KEGG]transposase IS4 family
32Bpetpseudo_154445946..4447394 [-], 1449163262247 pseudogene
33Bpet42034447180..4447851 [-], 672163262248  [UniProt]  [KEGG]conserved hypothetical protein
34Bpet42044447856..4448401 [-], 546163262249  [UniProt]  [KEGG]conserved hypothetical protein
35Bpet42054448383..4448748 [-], 366163262250  [UniProt]  [KEGG]conserved protein
36Bpet42064448745..4450142 [-], 1398163262251  [UniProt]  [KEGG]amine oxidase, flavin-containing
37fhuC`4450350..4450571 [-], 222163262252 pseudogene
38fhuC`4450541..4451134 [-], 594163262253 pseudogeneVF
39Bpet42074451137..4452837 [-], 1701163262254  [UniProt]  [KEGG]ABC transporter ATP-binding proteinVF
40fhuB4452834..4454837 [-], 2004163262255  [UniProt]  [KEGG]ferrichrome transport protein FhuB precursor
41fhuD4454840..4455850 [-], 1011163262256  [UniProt]  [KEGG]ABC transporter, substrate binding protein
42Bpet42104455865..4458099 [-], 2235163262257  [UniProt]  [KEGG]TonB-dependent outer membrane receptor
43Bpet42114458335..4459066 [+], 732163262258  [UniProt]  [KEGG]transcriptional regulator, AraC family
44Bpet42124459087..4462053 [-], 2967pseudogene -
45ssb54462263..4462775 [-], 513163262259  [UniProt]  [KEGG]-
46Bpet42144463373..4465010 [-], 1638163262260  [UniProt]  [KEGG]conserved hypothetical protein
47Bpet42154465003..4465263 [-], 261163262261  [UniProt]  [KEGG]conserved hypothetical protein
48parA44465247..4465990 [-], 744163262262  [UniProt]  [KEGG]hypothetical protein
49Bpet42174466229..4466879 [+], 651163262263  [UniProt]  [KEGG]transcriptional regulator, TetR family
50Bpet42184466979..4467413 [+], 435163262264  [UniProt]  [KEGG]hypothetical protein
51Bpet42194467479..4468015 [-], 537163262265  [UniProt]  [KEGG]transcriptional regulator, TetR familyVF
52Bpet42204468177..4469214 [-], 1038163262266  [UniProt]  [KEGG]putative octaprenyl-diphosphate synthase
53Bpet42214469495..4469962 [+], 468163262267  [UniProt]  [KEGG]putative transcriptional regulator, MarR family
54Bpet42224470620..4471867 [-], 1248163262268  [UniProt]  [KEGG]putative drug resistance transporter, Bcr/CflA family
55rob4472393..4473199 [-], 807163262269  [UniProt]  [KEGG]transcriptional regulator, AraC family
56Bpet42244473552..4474169 [-], 618163262270  [UniProt]  [KEGG]transcriptional regulator, LysR-family
57Bpet42254474277..4474561 [+], 285163262271  [UniProt]  [KEGG]conserved hypothetical protein, DNA-binding
58Bpet42264474588..4475481 [-], 894163262272  [UniProt]  [KEGG]transcriptional regulator, LysR family
59Bpet42274476812..4477657 [-], 846163262273  [UniProt]  [KEGG]conserved hypothetical protein
60Bpet42284477751..4479223 [-], 1473163262274  [UniProt]  [KEGG]probable outer membrane efflux protein
61mexD4479241..4479891 [-], 651163262275  [UniProt]  [KEGG]putative efflux system transmembrane proteinAR
62Bpet42304480017..4480658 [-], 642163262276  [UniProt]  [KEGG]transcriptional regulator, LysR family
63Bpet42314480780..4481085 [+], 306163262277  [UniProt]  [KEGG]predicted transcriptional regulator
64Bpet42324481123..4482013 [-], 891163262278  [UniProt]  [KEGG]transcriptional regulator, LysR family
65Bpet42334482293..4483201 [+], 909163262279  [UniProt]  [KEGG]-
66Bpet42344483214..4486447 [+], 3234163262280  [UniProt]  [KEGG]DNA-dependent ATPase, SNF2 family protein
67Bpet42354486444..4487259 [+], 816163262281  [UniProt]  [KEGG]hypothetical protein
68mod4487301..4489199 [+], 1899163262282  [UniProt]  [KEGG]type III restriction system methylase
69res4489211..4492216 [+], 3006163262283  [UniProt]  [KEGG]type III restriction enzyme
70Bpet42384492297..4493031 [+], 735163262284  [UniProt]  [KEGG]hypothetical protein
71Bpet42394493031..4493300 [+], 270163262285  [UniProt]  [KEGG]hypothetical protein predicted by Glimmer/Critica
72Bpet42404493317..4494267 [+], 951163262286  [UniProt]  [KEGG]-
73Bpet42414494253..4494795 [-], 543163262287  [UniProt]  [KEGG]putative transposase
74Bpet42424495314..4495805 [-], 492163262288  [UniProt]  [KEGG]putative transposase
75Bpet42434495912..4496289 [+], 378163262289  [UniProt]  [KEGG]hypothetical protein predicted by Glimmer/Critica
76Bpet42444496286..4496630 [+], 345163262290  [UniProt]  [KEGG]hypothetical protein predicted by Glimmer/Critica
77Bpet42454496850..4499525 [+], 2676163262291  [UniProt]  [KEGG]hypothetical conserved protein
78Bpet42464499522..4501285 [+], 1764163262292  [UniProt]  [KEGG]conserved hypothetical protein
79Bpet42474501282..4501770 [+], 489163262293  [UniProt]  [KEGG]hypothetical protein predicted by Glimmer/Critica
80Bpet42484501767..4502483 [+], 717163262294  [UniProt]  [KEGG]conserved hypothetical protein
81Bpet42494502476..4503819 [+], 1344163262295  [UniProt]  [KEGG]putative protein kinase
82Bpet42504503816..4507196 [+], 3381163262296  [UniProt]  [KEGG]hypothetical protein
83Bpet42514507190..4509130 [+], 1941163262297  [UniProt]  [KEGG]hypothetical protein predicted by Glimmer/Critica
84Bpet42524509133..4511769 [+], 2637163262298  [UniProt]  [KEGG]conserved hypothetical protein
85Bpet42534512615..4515101 [+], 2487163262299  [UniProt]  [KEGG]hypothetical protein
86Bpet42544515132..4516985 [-], 1854163262300  [UniProt]  [KEGG]putative helicase
87Bpet42554517283..4517600 [+], 318163262301  [UniProt]  [KEGG]probable suppressor proteinTA
88Bpet42564517600..4518058 [+], 459163262302  [UniProt]  [KEGG]hypothetical proteinTA
89Bpet42574518086..4518445 [+], 360163262303  [UniProt]  [KEGG]putative membrane protein
90Bpet42584518452..4519975 [-], 1524163262304  [UniProt]  [KEGG]conserved Hypothetical protein
91Bpet42594519991..4520362 [-], 372163262305  [UniProt]  [KEGG]hypothetical protein predicted by Glimmer/Critica
92Bpet42604520359..4521765 [-], 1407163262306  [UniProt]  [KEGG]conserved hypothetical protein
93Bpet42614521776..4522723 [-], 948163262307  [UniProt]  [KEGG]conserved hypothetical protein
94Bpet42624522720..4523166 [-], 447163262308  [UniProt]  [KEGG]putative secreted protein
95radC54523331..4523825 [-], 495163262309  [UniProt]  [KEGG]DNA repair protein radC homologVF
96Bpet42644524004..4524741 [-], 738163262310  [UniProt]  [KEGG]putative secreted protein
97Bpet42654524784..4527693 [-], 2910163262311  [UniProt]  [KEGG]conserved hypothetical protein
98Bpet42664527693..4528142 [-], 450163262312  [UniProt]  [KEGG]putative lipoprotein
99Bpet42674528123..4529532 [-], 1410163262313  [UniProt]  [KEGG]putative exported protein
100Bpet42684529522..4530460 [-], 939163262314  [UniProt]  [KEGG]putative secreted protein
101Bpet42694530457..4531149 [-], 693163262315  [UniProt]  [KEGG]conserved hypothetical protein
102Bpet42704531146..4531556 [-], 411163262316  [UniProt]  [KEGG]conserved hypothetical protein
103Bpet42714531570..4531929 [-], 360163262317  [UniProt]  [KEGG]putative membrane protein
104Bpet42724531946..4532179 [-], 234163262318  [UniProt]  [KEGG]putative membrane protein
105Bpet42734532176..4532559 [-], 384163262319  [UniProt]  [KEGG]putative membrane protein
106Bpet42744532658..4533419 [-], 762163262320  [UniProt]  [KEGG]putative membrane protein
107Bpet42754533416..4535143 [-], 1728163262321  [UniProt]  [KEGG]hypothetical protein
108Bpet42764534929..4535600 [-], 672163262322  [UniProt]  [KEGG]hypothetical protein
109Bpet42774535605..4536153 [-], 549163262323  [UniProt]  [KEGG]conserved exported protein
110Bpet42784536150..4536755 [-], 606163262324  [UniProt]  [KEGG]conserved exported protein
111Bpet42794536737..4537474 [-], 738163262325  [UniProt]  [KEGG]conserved protein, putatively exported
112Bpet42804537489..4538130 [-], 642163262326  [UniProt]  [KEGG]putative membrane protein
113Bpet42814538127..4538705 [-], 579163262327  [UniProt]  [KEGG]putative lipoproteinVF
114Bpet42824538848..4540500 [-], 1653163262328  [UniProt]  [KEGG]hypothetical protein predicted by Glimmer/Critica
115Bpet42834540566..4542368 [-], 1803163262329  [UniProt]  [KEGG]conserved hypothetical protein
116Bpet42844542541..4544475 [-], 1935163262330  [UniProt]  [KEGG]conserved plasmid related protein
117ltrA14544616..4546436 [-], 1821163262331  [UniProt]  [KEGG]Mobile mitochondrial group II intron of COX1 which is involved in pre-mRNA splicing and in deletion of introns from mitochondrial DNA
118Bpet42864547019..4547357 [-], 339163262332  [UniProt]  [KEGG]plasmid-related protein
119Bpet42874547493..4547798 [-], 306163262333  [UniProt]  [KEGG]hypothetical protein predicted by Glimmer/Critica
120Bpet42884547868..4548179 [-], 312163262334  [UniProt]  [KEGG]hypothetical protein
121Bpet42894548282..4549307 [-], 1026163262335  [UniProt]  [KEGG]hypothetical protein predicted by Glimmer/Critica
122Bpet42904549438..4551153 [-], 1716163262336  [UniProt]  [KEGG]reverse transcriptase
123tnp254551433..4551720 [+], 288163262337  [UniProt]  [KEGG]transposaseVF
124Bpet42924551717..4552607 [+], 891163262338  [UniProt]  [KEGG]probable transposaseVF
125Bpet42934553166..4553816 [-], 651163262339  [UniProt]  [KEGG]hypothetical protein
126Bpet42944554103..4555821 [-], 1719163262340  [UniProt]  [KEGG]reverse transcriptase
127Bpet42954556423..4556722 [-], 300163262341  [UniProt]  [KEGG]conserved hypothetical protein
128Bpet42964556817..4557515 [-], 699163262342  [UniProt]  [KEGG]conserved hypothetical protein
129Bpet42974557611..4558438 [-], 828163262343  [UniProt]  [KEGG]Hypothetical protein (o273)VF
130Bpet42984558589..4559503 [-], 915163262344  [UniProt]  [KEGG]hypothetical protein
131Bpet42994559882..4560694 [-], 813163262345  [UniProt]  [KEGG]conserved hypothetical protein
132Bpet43004560975..4561253 [-], 279163262346  [UniProt]  [KEGG]hypothetical protein predicted by Glimmer/Critica
133Bpet43014561348..4562085 [-], 738163262347  [UniProt]  [KEGG]conserved hypothetical protein
134Bpet43024562298..4562690 [-], 393163262348  [UniProt]  [KEGG]conserved hypothetical protein
135Bpet43034562712..4562924 [-], 213163262349  [UniProt]  [KEGG]hypothetical protein
136Bpet43044563253..4563498 [-], 246163262350  [UniProt]  [KEGG]conserved hypothetical protein
137topB44564022..4566034 [-], 2013163262351  [UniProt]  [KEGG]DNA topoisomerase III
138ssb64566304..4566744 [-], 441163262352  [UniProt]  [KEGG]-
139Bpet43074566818..4567345 [-], 528163262353  [UniProt]  [KEGG]conserved hypothetical protein
140Bpet43084567342..4568142 [-], 801163262354  [UniProt]  [KEGG]conserved hypothetical protein
141Bpet43094568460..4569704 [-], 1245163262355  [UniProt]  [KEGG]conserved hypothetical protein
142Bpet43104569708..4570268 [-], 561163262356  [UniProt]  [KEGG]conserved hypothetical protein
143Bpet43114570284..4571876 [-], 1593163262357  [UniProt]  [KEGG]conserved hypothetical protein
144Bpet43124571869..4572117 [-], 249163262358  [UniProt]  [KEGG]conserved hypothetical protein
145parA54572101..4572976 [-], 876163262359  [UniProt]  [KEGG]chromosome partitioning protein
146alpA24573019..4573231 [-], 213163262360  [UniProt]  [KEGG]-VF
147Bpet43154573350..4574105 [-], 756163262361  [UniProt]  [KEGG]conserved hypothetical protein
148intB134574670..4576598 [-], 1929163262362  [UniProt]  [KEGG]phage-related integrase
149bug924577051..4578043 [-], 993163262363 putative secreted protein
150Bpet43184578108..4579058 [-], 951163262364 hydroxymethylglutaryl-CoA lyase
151Bpet43194579055..4580248 [-], 1194163262365 -
152Bpet43204580366..4581265 [-], 900163262366 transcriptional regulator, LysR-family
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins143Fasta
(1) Lechner M; Schmitt K; Bauer S; Hot D; Hubans C; Levillain E; Locht C; Lemoine Y; Gross R (2009). Genomic island excisions in Bordetella petrii. BMC Microbiol. 9:141. [PudMed:19615092] experimental
 
experimental experimental literature