ICEberg
ICEberg ID223
NameICEMmc-GM12
FamilyICEM
OrganismMycoplasma mycoides subsp. capri str. GM12 transgenic clone deltatypeIIIres
Size (bp)29580
GC content [Genome] (%)24 [24]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP001668 (complete ICE sequence in this genome)
Replicon-
Genome coordinates670961..700540
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of ICEMmc-GM12 form CP001668
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1MMCAP2_0551668140..670644 [+], 2505256384187 putative liporotein
2MMCAP2_0552670961..671749 [+], 789256383850  [UniProt] conserved hypothetical integrative conjugal element protein
3MMCAP2_0553672018..673259 [+], 1242256383922  [UniProt] conserved hypothetical integrative conjugal element protein
4MMCAP2_0554673432..674265 [+], 834256383908  [UniProt] C-5 cytosine-specific DNA methylase
5MMCAP2_0555674294..676309 [+], 2016256383967  [UniProt] membrane protein, putative (TraD/TraG family)
6MMCAP2_0556676325..677281 [+], 957256383658  [UniProt] conserved hypothetical integrative conjugal element protein
7MMCAP2_0557677265..678182 [+], 918256383770  [UniProt] conserved hypothetical integrative conjugal element protein
8MMCAP2_0558678197..678613 [+], 417256384373  [UniProt] single-strand binding family protein
9MMCAP2_0559678878..680068 [+], 1191256384460  [UniProt] conserved hypothetical integrative conjugal element protein
10MMCAP2_0560680306..681838 [+], 1533256384043  [UniProt] putative liporotein
11MMCAP2_0561681840..682031 [+], 192256384186  [UniProt] conserved hypothetical integrative conjugal element protein
12MMCAP2_0562682128..682358 [+], 231256384383  [UniProt] conserved hypothetical integrative conjugal element protein
13MMCAP2_0563682386..685109 [+], 2724256384051  [UniProt] putative membrane protein
14MMCAP2_0564685216..685401 [+], 186256384173  [UniProt] conserved hypothetical integrative conjugal element protein
15MMCAP2_0565685491..685868 [+], 378256384209  [UniProt] conserved hypothetical integrative conjugal element protein
16MMCAP2_0567687822..690665 [+], 2844256383684  [UniProt] putative membrane protein
17MMCAP2_0568690678..691343 [+], 666256383768  [UniProt] conserved hypothetical integrative conjugal element protein
18MMCAP2_0569691390..696357 [+], 4968256383754  [UniProt] putative membrane protein
19MMCAP2_0570696813..697559 [+], 747256384372  [UniProt] conserved hypothetical integrative conjugal element protein
20MMCAP2_0571697755..698120 [+], 366256384446  [UniProt] conserved hypothetical integrative conjugal element protein
21MMCAP2_0572698344..699258 [+], 915256384139  [UniProt] CobQ/CobB/MinD/ParA nucleotide binding domain, putative
22MMCAP2_0573699308..700540 [+], 1233256384166  [UniProt] conserved hypothetical integrative conjugal element protein
23MMCAP2_0574701127..703667 [+], 2541256384130 putative liporotein
24atpD_1703723..705102 [-], 1380256384274 ATP synthase F1, beta subunit
 
flank Flanking regions
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins21Fasta
(1) Thiaucourt F; Manso-Silvan L; Salah W; Barbe V; Vacherie B; Jacob D; Breton M; Dupuy V; Lomenech AM; Blanchard A; Sirand-Pugnet P (2011). Mycoplasma mycoides, from "mycoides Small Colony" to "capri". A microevolutionary perspective. BMC Genomics. 12:114. [PudMed:21324191]