ICEberg
ICEberg ID232
NameICESsu(BM407)1
FamilyUnclassified
OrganismStreptococcus suis BM407
Size (bp)75717
GC content [Genome] (%)38 [41]
Insertion siteluciferase-like monooxygenase (SSUBM407_0455)
FunctionTetracycline resistance
Species that ICE can be transferred to-
Nucleotide SequenceFM252032 (complete ICE sequence in this genome)
Replicon chromosome (2146229 bp, Project:32237) [NC_012926]
Genome coordinates504649..580365
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of ICESsu(BM407)1 form FM252032
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1SSUBM407_0452500726..501883 [+], 1158251817538 putative exported protein
2SSUBM407_0453501864..502559 [+], 696251817539 ABC transporter ATP-binding protein
3SSUBM407_0454502560..503807 [+], 1248251817540 putative permease
4SSUBM407_0455503933..580966 [+], 77034pseudogene luciferase-like monooxygenase (pseudogene)
5SSUBM407_0456504649..504822 [+], 174251817541  [UniProt]  [KEGG]hypothetical protein
6SSUBM407_0457504819..505637 [+], 819251817542  [UniProt]  [KEGG]replication initiator protein A protein
7SSUBM407_0458505786..507141 [+], 1356251817543  [UniProt]  [KEGG]C-5 cytosine-specific DNA methylase
8SSUBM407_0459507125..507553 [+], 429251817544  [UniProt]  [KEGG]hypothetical protein
9SSUBM407_0460507564..507947 [+], 384251817545  [UniProt]  [KEGG]hypothetical protein
10SSUBM407_0461507950..508189 [+], 240251817546  [UniProt]  [KEGG]hypothetical protein
11SSUBM407_0462508192..508776 [+], 585251817547  [UniProt]  [KEGG]CAAX amino terminal protease family protein
12SSUBM407_0463508854..509342 [+], 489251817548  [UniProt]  [KEGG]hypothetical protein
13SSUBM407_0464509342..511159 [+], 1818251817549  [UniProt]  [KEGG]putative conjugal transfer protein TraG
14SSUBM407_0465511177..511419 [+], 243251817550  [UniProt]  [KEGG]putative membrane protein
15SSUBM407_0466511438..512292 [+], 855251817551  [UniProt]  [KEGG]putative TrbL/VirB6 plasmid conjugal transfer protein
16SSUBM407_0467512354..512707 [+], 354251817552  [UniProt]  [KEGG]putative membrane protein
17SSUBM407_0468512685..515015 [+], 2331251817553  [UniProt]  [KEGG]hypothetical protein
18SSUBM407_0469515017..517818 [+], 2802251817554  [UniProt]  [KEGG]hypothetical protein
19SSUBM407_0470518157..518792 [+], 636251817555  [UniProt]  [KEGG]hypothetical protein
20SSUBM407_0471518952..523847 [+], 4896251817556  [UniProt]  [KEGG]putative glucan-binding surface-anchored protein
21SSUBM407_0471a523848..524039 [+], 192251817557  [UniProt]  [KEGG]hypothetical protein
22SSUBM407_0472524023..524574 [+], 552251817558  [UniProt]  [KEGG]hypothetical protein
23SSUBM407_0473524624..531469 [+], 6846251817559  [UniProt]  [KEGG]hypothetical protein
24SSUBM407_0474531540..531839 [+], 300251817560  [UniProt]  [KEGG]hypothetical protein
25SSUBM407_0475531853..532152 [+], 300251817561  [UniProt]  [KEGG]putative membrane protein
26SSUBM407_0476532197..533084 [-], 888251817562  [UniProt]  [KEGG]integraseVF
27SSUBM407_0477533176..534126 [+], 951251817563  [UniProt]  [KEGG]putative D-alanine--D-alanine ligase
28SSUBM407_0478534107..535402 [-], 1296251817564  [UniProt]  [KEGG]hypothetical protein
29SSUBM407_0479535571..536788 [-], 1218251817565  [UniProt]  [KEGG]integrase
30SSUBM407_0479a536870..537073 [-], 204251817566  [UniProt]  [KEGG]excisionase
31SSUBM407_0480537534..537764 [-], 231251817567  [UniProt]  [KEGG]hypothetical protein
32SSUBM407_0481537761..538183 [-], 423251817568  [UniProt]  [KEGG]putative DNA-binding protein
33SSUBM407_0482538688..539041 [+], 354251817569  [UniProt]  [KEGG]DNA-binding protein
34tetM1539387..541306 [-], 1920251817570  [UniProt]  [KEGG]tetracycline resistance protein TetM 1AR
35SSUBM407_0484541683..542615 [-], 933251817571  [UniProt]  [KEGG]putative membrane protein
36SSUBM407_0485542612..543613 [-], 1002251817572  [UniProt]  [KEGG]putative exported proteinVF
37SSUBM407_0486543610..545787 [-], 2178251817573  [UniProt]  [KEGG]putative membrane protein
38SSUBM407_0487545790..548237 [-], 2448251817574  [UniProt]  [KEGG]hypothetical protein
39SSUBM407_0488548221..548727 [-], 507251817575  [UniProt]  [KEGG]putative membrane protein
40SSUBM407_0489548702..549199 [-], 498251817576  [UniProt]  [KEGG]antirestriction protein
41SSUBM407_0490549316..549537 [-], 222251817577  [UniProt]  [KEGG]putative membrane protein
42SSUBM407_0491549580..550785 [-], 1206251817578  [UniProt]  [KEGG]replication initiation factor
43SSUBM407_0492550963..552348 [-], 1386251817579  [UniProt]  [KEGG]FtsK/SpoIIIE family protein
44SSUBM407_0493552377..552763 [-], 387251817580  [UniProt]  [KEGG]hypothetical protein
45SSUBM407_0494552779..553093 [-], 315251817581  [UniProt]  [KEGG]hypothetical protein
46SSUBM407_0495553409..554452 [-], 1044251817582  [UniProt]  [KEGG]hypothetical protein
47SSUBM407_0496554587..555225 [+], 639251817583  [UniProt]  [KEGG]putative exported protein
48SSUBM407_0497555264..556340 [+], 1077251817584  [UniProt]  [KEGG]DNA primase
49SSUBM407_0498556394..556621 [+], 228251817585  [UniProt]  [KEGG]hypothetical protein
50SSUBM407_0499556618..557007 [+], 390251817586  [UniProt]  [KEGG]hypothetical protein
51SSUBM407_0500556997..557353 [+], 357251817587  [UniProt]  [KEGG]hypothetical protein
52SSUBM407_0501557362..557670 [-], 309251817588  [UniProt]  [KEGG]hypothetical protein
53SSUBM407_0502557657..558007 [-], 351251817589  [UniProt]  [KEGG]hypothetical protein
54SSUBM407_0503558004..559419 [-], 1416251817590  [UniProt]  [KEGG]UmuC-like DNA-repair protein
55SSUBM407_0504559562..560254 [-], 693251817591  [UniProt]  [KEGG]putative DNA-binding protein
56SSUBM407_0505561071..561250 [+], 180251817592  [UniProt]  [KEGG]bacteriocin
57SSUBM407_0506561888..562247 [+], 360251817593  [UniProt]  [KEGG]hypothetical protein
58SSUBM407_0507562257..562622 [+], 366251817594  [UniProt]  [KEGG]putative mobilisation protein
59SSUBM407_0508562609..564474 [+], 1866251817595  [UniProt]  [KEGG]puative relaxase protein
60SSUBM407_0509564518..565222 [-], 705251817596  [UniProt]  [KEGG]haloacid dehalogenase-like hydrolase
61lacR2565231..565992 [-], 762251817597  [UniProt]  [KEGG]lactose phosphotransferase system repressor 2
62glkA2566172..567122 [+], 951251817598  [UniProt]  [KEGG]glucokinase 2
63lacA2567358..567783 [+], 426251817599  [UniProt]  [KEGG]galactose-6-phosphate isomerase subunit LacA 2
64lacB2567817..568332 [+], 516251817600  [UniProt]  [KEGG]galactose-6-phosphate isomerase subunit LacB 2
65lacC2568344..569276 [+], 933251817601  [UniProt]  [KEGG]tagatose-6-phosphate kinase 2
66lacD2569279..570259 [+], 981251817602  [UniProt]  [KEGG]tagatose 1,6-diphosphate aldolase 2
67lacF2570287..570604 [+], 318251817603  [UniProt]  [KEGG]lactose-specific phosphotransferase enzyme IIA component 2
68lacE2570604..572298 [+], 1695251817604  [UniProt]  [KEGG]PTS system lactose-specific EIICB component 2
69lacG2572364..573770 [+], 1407251817605  [UniProt]  [KEGG]6-phospho-beta-galactosidase 2
70lacX2573858..574754 [+], 897251817606  [UniProt]  [KEGG]protein LacX 2
71SSUBM407_0520575001..575231 [+], 231251817607  [UniProt]  [KEGG]putative DNA-binding protein
72SSUBM407_0521575492..575632 [+], 141251817608  [UniProt]  [KEGG]hypothetical protein
73SSUBM407_0522575731..577305 [+], 1575251817609  [UniProt]  [KEGG]site-specific recombinase
74SSUBM407_0523577305..578924 [+], 1620251817610  [UniProt]  [KEGG]site-specific recombinase
75SSUBM407_0524578917..580365 [+], 1449251817611  [UniProt]  [KEGG]site-specific recombinase
76SSUBM407_0455503933..580966 [+], 77034pseudogene luciferase-like monooxygenase (pseudogene)
77SSUBM407_0525581166..581402 [-], 237251817612 hypothetical protein
78lysS581554..583044 [-], 1491251817613 lysyl-tRNA synthetase
79SSUBM407_0527583147..583773 [-], 627251817614 phosphoglycerate mutase family protein
80SSUBM407_0528583776..584258 [-], 483251817615 conserved hypothetical protein
81SSUBM407_0529584258..585100 [-], 843251817616 putative membrane protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins71Fasta
(1) Palmieri C; Varaldo PE; Facinelli B (2011). Streptococcus suis, an Emerging Drug-Resistant Animal and Human Pathogen. Front Microbiol. 0.246527778. [PudMed:22275909]
(2) Holden MT; Hauser H; Sanders M; Ngo TH; Cherevach I; Cronin A; Goodhead I; Mungall K; Quail MA; Price C; Rabbinowitsch E; Sharp S; Croucher NJ; Chieu TB; Mai NT; Diep TS; Chinh NT; Kehoe M; Leigh JA; Ward PN; Dowson CG; Whatmore AM; Chanter N; Iversen P; Gottschalk M; Slater JD; Smith HE; Spratt BG; Xu J; Ye C; Bentley S; Barrell BG; Schultsz C; Maskell DJ; Parkhill J (2009). Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis. PLoS One. 4(7):e6072. [PudMed:19603075]