ICEberg
ICEberg ID233
NameICESsu(BM407)2
FamilyICESa2603
OrganismStreptococcus suis BM407
Size (bp)80320
GC content [Genome] (%)37 [41]
Insertion sitethe 3' end of 50S rDNA (SSUBM407_0933)
FunctionTetracycline and streptomycin resistance
Species that ICE can be transferred to-
Nucleotide SequenceFM252032 (complete ICE sequence in this genome)
Replicon chromosome (2146229 bp, Project:32237) [NC_012926]
Genome coordinates1005794..1086113
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of ICESsu(BM407)2 form FM252032
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1SSUBM407_09301001264..1002106 [+], 843251817998 SMF family protein
2topA1002199..1004292 [+], 2094251817999 DNA topoisomerase I
3rplJ1004869..1005363 [+], 495251818000 50S ribosomal protein L10
4rplL1005429..1005794 [+], 366251818001 50S ribosomal protein L7/L12
5SSUBM407_0933a1005993..1006166 [+], 174251818002  [UniProt]  [KEGG]hypothetical protein
6SSUBM407_09341006163..1006981 [+], 819251818003  [UniProt]  [KEGG]replication initiator protein A protein
7SSUBM407_09351007130..1008485 [+], 1356251818004  [UniProt]  [KEGG]C-5 cytosine-specific DNA methylase
8SSUBM407_09361008469..1008897 [+], 429251818005  [UniProt]  [KEGG]hypothetical protein
9SSUBM407_09371008908..1009291 [+], 384251818006  [UniProt]  [KEGG]hypothetical protein
10SSUBM407_09381009300..1009533 [+], 234251818007  [UniProt]  [KEGG]hypothetical protein
11SSUBM407_09391009536..1010120 [+], 585251818008  [UniProt]  [KEGG]CAAX amino terminal protease family protein
12SSUBM407_09401010198..1010686 [+], 489251818009  [UniProt]  [KEGG]hypothetical protein
13SSUBM407_09411010686..1012503 [+], 1818251818010  [UniProt]  [KEGG]putative conjugal transfer protein TraG
14SSUBM407_09421012521..1012763 [+], 243251818011  [UniProt]  [KEGG]putative membrane protein
15SSUBM407_09431012782..1013636 [+], 855251818012  [UniProt]  [KEGG]putative TrbL/VirB6 plasmid conjugal transfer protein
16SSUBM407_09441013698..1014051 [+], 354251818013  [UniProt]  [KEGG]putative membrane protein
17SSUBM407_09451014029..1016359 [+], 2331251818014  [UniProt]  [KEGG]hypothetical protein
18SSUBM407_09461016361..1019162 [+], 2802251818015  [UniProt]  [KEGG]hypothetical protein
19SSUBM407_09471019224..1020069 [-], 846251818016  [UniProt]  [KEGG]hypothetical protein
20SSUBM407_09481020066..1020656 [-], 591251818017  [UniProt]  [KEGG]hypothetical protein
21SSUBM407_09491020937..1025832 [+], 4896251818018  [UniProt]  [KEGG]putative glucan-binding surface-anchored protein
22SSUBM407_0949a1025833..1026024 [+], 192251818019  [UniProt]  [KEGG]hypothetical protein
23SSUBM407_09501026008..1026559 [+], 552251818020  [UniProt]  [KEGG]hypothetical protein
24SSUBM407_09511026609..1030454 [+], 3846pseudogene hypothetical protein (fragment)
25SSUBM407_0951a1030458..1030832 [+], 375pseudogene hypothetical protein (fragment)
26ermB1031089..1031826 [+], 738251818021  [UniProt]  [KEGG]rRNA adenine N-6-methyltransferaseAR
27SSUBM407_09531032298..1032672 [+], 375251818022  [UniProt]  [KEGG]hypothetical protein
28tetO1033039..1034958 [+], 1920251818023  [UniProt]  [KEGG]tetracycline resistance protein TetOAR
29SSUBM407_0954a1035250..1035327 [-], 78pseudogene putative adenine phosphoribosyltransferase (fragment)
30aadE1035371..1036234 [-], 864251818024  [UniProt]  [KEGG]streptomycin adenylyltransferase
31SSUBM407_09561036267..1036950 [-], 684251818025  [UniProt]  [KEGG]putative methyltransferase
32SSUBM407_09571037077..1037550 [-], 474251818026  [UniProt]  [KEGG]dihydrofolate reductase
33SSUBM407_09581037653..1038678 [-], 1026251818027  [UniProt]  [KEGG]putative transposase
34SSUBM407_09591038786..1039655 [-], 870251818028  [UniProt]  [KEGG]hypothetical proteinTA
35SSUBM407_09601039670..1039894 [-], 225251818029  [UniProt]  [KEGG]putative DNA-binding proteinTA
36SSUBM407_0960a1040037..1040117 [-], 81pseudogene DNA recombinase (fragment)
37SSUBM407_0960b1040118..1040168 [+], 51pseudogene putative membrane protein (fragment)
38SSUBM407_0960c1040172..1040201 [+], 30pseudogene two-component sensor histidine kinase (fragment)
39SSUBM407_0961a1040599..1041102 [-], 504pseudogene transposase (fragment)
40SSUBM407_09611041609..1042247 [+], 639251818030  [UniProt]  [KEGG]putative exported protein
41SSUBM407_09621042286..1043362 [+], 1077251818031  [UniProt]  [KEGG]DNA primase
42SSUBM407_09631043416..1043643 [+], 228251818032  [UniProt]  [KEGG]hypothetical protein
43SSUBM407_09641043640..1044029 [+], 390251818033  [UniProt]  [KEGG]hypothetical protein
44SSUBM407_09651044016..1044369 [+], 354251818034  [UniProt]  [KEGG]hypothetical protein
45SSUBM407_09661044439..1044915 [+], 477251818035  [UniProt]  [KEGG]antidote epsilon proteinTA
46SSUBM407_09671044915..1045691 [+], 777251818036  [UniProt]  [KEGG]zeta-toxinTA
47SSUBM407_09681045688..1047775 [+], 2088251818037  [UniProt]  [KEGG]hypothetical protein
48SSUBM407_09691047762..1049579 [+], 1818251818038  [UniProt]  [KEGG]DNA helicase
49SSUBM407_09901049673..1074215 [-], 24543pseudogene putative ATP-binding protein (pseudogene)
50SSUBM407_09701050335..1050649 [+], 315251818039  [UniProt]  [KEGG]hypothetical protein
51SSUBM407_09711050665..1051051 [+], 387251818040  [UniProt]  [KEGG]hypothetical protein
52SSUBM407_09721051080..1052462 [+], 1383251818041  [UniProt]  [KEGG]FtsK/SpoIIIE family protein
53SSUBM407_09731052641..1053846 [+], 1206251818042  [UniProt]  [KEGG]replication initiation factor
54SSUBM407_09741053889..1054110 [+], 222251818043  [UniProt]  [KEGG]putative membrane protein
55SSUBM407_09751054227..1054724 [+], 498251818044  [UniProt]  [KEGG]antirestriction protein
56SSUBM407_09761054699..1055205 [+], 507251818045  [UniProt]  [KEGG]putative membrane protein
57SSUBM407_09771055189..1057636 [+], 2448251818046  [UniProt]  [KEGG]hypothetical protein
58SSUBM407_09781057639..1061887 [+], 4249pseudogene putative membrane protein (pseudogene)
59SSUBM407_09791059554..1060600 [+], 1047251818047  [UniProt]  [KEGG]putative transposase
60cat1060737..1061360 [+], 624251818048  [UniProt]  [KEGG]chloramphenicol acetyltransferaseVF
61SSUBM407_09811061884..1062885 [+], 1002251818049  [UniProt]  [KEGG]putative exported proteinVF
62SSUBM407_09821062882..1063814 [+], 933251818050  [UniProt]  [KEGG]putative membrane protein
63tetM21064191..1066110 [+], 1920251818051  [UniProt]  [KEGG]tetracycline resistance protein TetM 2AR
64tetL1066304..1067680 [+], 1377251818052  [UniProt]  [KEGG]tetracycline resistance protein TetLAR
65pre1068244..1069506 [+], 1263251818053  [UniProt]  [KEGG]plasmid recombination enzyme type 2
66SSUBM407_09861069781..1070080 [-], 300pseudogene putative DNA-binding protein (fragment)
67SSUBM407_09871070585..1071007 [+], 423251818054  [UniProt]  [KEGG]putative DNA-binding protein
68SSUBM407_0987a1071004..1071234 [+], 231251818055  [UniProt]  [KEGG]hypothetical protein
69SSUBM407_09881071695..1071898 [+], 204251818056  [UniProt]  [KEGG]excisionase
70SSUBM407_09891071980..1073197 [+], 1218251818057  [UniProt]  [KEGG]integrase
71SSUBM407_09911074580..1074945 [+], 366251818058  [UniProt]  [KEGG]hypothetical protein
72SSUBM407_09921074945..1075310 [+], 366251818059  [UniProt]  [KEGG]putative mobilisation protein
73SSUBM407_09931075297..1077162 [+], 1866251818060  [UniProt]  [KEGG]relaxase
74SSUBM407_09951077725..1079824 [+], 2100251818061  [UniProt]  [KEGG]ABC transporter ATP-binding membrane protein
75SSUBM407_09961079837..1080553 [+], 717251818062  [UniProt]  [KEGG]putative ABC transporter ATP-binding protein
76SSUBM407_09971080546..1081334 [+], 789251818063  [UniProt]  [KEGG]membrane protein
77SSUBM407_09981081331..1082038 [+], 708251818064  [UniProt]  [KEGG]membrane protein
78SSUBM407_09991082069..1082752 [+], 684251818065  [UniProt]  [KEGG]response regulator protein
79SSUBM407_10001082737..1083834 [+], 1098251818066  [UniProt]  [KEGG]sensor histidine kinase
80SSUBM407_10011084164..1084385 [+], 222251818067  [UniProt]  [KEGG]transcriptional regulator, Cro/CI family
81SSUBM407_10021084664..1084891 [+], 228251818068  [UniProt]  [KEGG]hypothetical protein
82SSUBM407_10031084914..1086113 [+], 1200251818069  [UniProt]  [KEGG]tyrosine family site-specific integrase
83SSUBM407_10041086298..1087047 [+], 750251818070 haloacid dehalogenase-like hydrolase
84SSUBM407_10051087243..1088577 [+], 1335251818071 protein Gid homolog
85SSUBM407_10061088651..1089490 [+], 840251818072 AraC family regulatory protein
86SSUBM407_10071089555..1090559 [+], 1005251818073 conserved hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins68Fasta
(1) Palmieri C; Varaldo PE; Facinelli B (2011). Streptococcus suis, an Emerging Drug-Resistant Animal and Human Pathogen. Front Microbiol. 0.246527778. [PudMed:22275909]
(2) Holden MT; Hauser H; Sanders M; Ngo TH; Cherevach I; Cronin A; Goodhead I; Mungall K; Quail MA; Price C; Rabbinowitsch E; Sharp S; Croucher NJ; Chieu TB; Mai NT; Diep TS; Chinh NT; Kehoe M; Leigh JA; Ward PN; Dowson CG; Whatmore AM; Chanter N; Iversen P; Gottschalk M; Slater JD; Smith HE; Spratt BG; Xu J; Ye C; Bentley S; Barrell BG; Schultsz C; Maskell DJ; Parkhill J (2009). Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis. PLoS One. 4(7):e6072. [PudMed:19603075]
 

Genomics & Bioinformatics Group in MML, SJTU