ICEberg
ICEberg ID234
NameICESsu(SC84)
FamilyICESa2603
OrganismStreptococcus suis SC84
Size (bp)89165
GC content [Genome] (%)37 [41]
Insertion sitethe 3' end of 50S rDNA (SSUSC84_0891)
FunctionTetracycline resistance
Species that ICE can be transferred to-
Nucleotide SequenceFM252031 (complete ICE sequence in this genome)
Replicon chromosome (2095898 bp, Project:32239) [NC_012924]
Genome coordinates872762..961926
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of ICESsu(SC84) form FM252031
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1SSUSC84_0803868316..869320 [-], 1005251815965 conserved hypothetical protein
2SSUSC84_0804869385..870224 [-], 840251815966 AraC family regulatory protein
3SSUSC84_0805870298..871632 [-], 1335251815967 protein Gid homolog
4SSUSC84_0806871828..872577 [-], 750251815968 haloacid dehalogenase-like hydrolase
5SSUSC84_0807872762..873961 [-], 1200251815969  [UniProt]  [KEGG]tyrosine family site-specific integrase
6SSUSC84_0808873984..874211 [-], 228251815970  [UniProt]  [KEGG]hypothetical protein
7SSUSC84_0809874490..874711 [-], 222251815971  [UniProt]  [KEGG]transcriptional regulator, Cro/CI family
8SSUSC84_0810875041..876138 [-], 1098251815972  [UniProt]  [KEGG]sensor histidine kinase
9SSUSC84_0811876123..876806 [-], 684251815973  [UniProt]  [KEGG]response regulator protein
10SSUSC84_0812876837..877544 [-], 708251815974  [UniProt]  [KEGG]membrane protein
11SSUSC84_0813877541..878329 [-], 789251815975  [UniProt]  [KEGG]membrane protein
12SSUSC84_0814878322..879038 [-], 717251815976  [UniProt]  [KEGG]putative ABC transporter ATP-binding protein
13SSUSC84_0815879059..881281 [-], 2223251815977  [UniProt]  [KEGG]ABC transporter ATP-binding membrane protein
14SSUSC84_0816881285..881536 [-], 252251815978  [UniProt]  [KEGG]conserved hypothetical protein
15SSUSC84_0817881548..883170 [-], 1623251815979  [UniProt]  [KEGG]putative asparagine synthetase
16SSUSC84_0818883391..883519 [-], 129251815980  [UniProt]  [KEGG]hypothetical protein
17SSUSC84_0819884204..886069 [-], 1866251815981  [UniProt]  [KEGG]relaxase
18SSUSC84_0820886056..886421 [-], 366251815982  [UniProt]  [KEGG]putative mobilisation protein
19SSUSC84_0821886421..886786 [-], 366251815983  [UniProt]  [KEGG]hypothetical protein
20SSUSC84_0822887151..906351 [+], 19201pseudogene putative ATP-binding protein (pseudogene)
21SSUSC84_0823888169..889386 [-], 1218251815984  [UniProt]  [KEGG]integrase
22SSUSC84_0824889468..889671 [-], 204251815985  [UniProt]  [KEGG]excisionase
23SSUSC84_0824a890132..890362 [-], 231251815986  [UniProt]  [KEGG]hypothetical protein
24SSUSC84_0825890359..890781 [-], 423251815987  [UniProt]  [KEGG]putative DNA-binding protein
25SSUSC84_0826891285..891638 [+], 354251815988  [UniProt]  [KEGG]putative DNA-binding protein
26tetM891984..893903 [-], 1920251815989  [UniProt]  [KEGG]tetracycline resistance protein TetMAR
27SSUSC84_0828894280..895212 [-], 933251815990  [UniProt]  [KEGG]putative membrane protein
28SSUSC84_0829895209..896210 [-], 1002251815991  [UniProt]  [KEGG]putative exported proteinVF
29SSUSC84_0830896207..898384 [-], 2178251815992  [UniProt]  [KEGG]putative membrane protein
30SSUSC84_0831898387..900834 [-], 2448251815993  [UniProt]  [KEGG]hypothetical protein
31SSUSC84_0832900818..901324 [-], 507251815994  [UniProt]  [KEGG]putative membrane protein
32SSUSC84_0833901299..901796 [-], 498251815995  [UniProt]  [KEGG]antirestriction protein
33SSUSC84_0834901913..902134 [-], 222251815996  [UniProt]  [KEGG]putative membrane protein
34SSUSC84_0835902177..903382 [-], 1206251815997  [UniProt]  [KEGG]replication initiation factor
35SSUSC84_0836903560..904945 [-], 1386251815998  [UniProt]  [KEGG]FtsK/SpoIIIE family protein
36SSUSC84_0837904974..905357 [-], 384251815999  [UniProt]  [KEGG]hypothetical protein
37SSUSC84_0838905376..905690 [-], 315251816000  [UniProt]  [KEGG]hypothetical protein
38SSUSC84_0839906446..908263 [-], 1818251816001  [UniProt]  [KEGG]DNA helicase
39SSUSC84_0840908250..910337 [-], 2088251816002  [UniProt]  [KEGG]hypothetical protein
40SSUSC84_0841910334..911110 [-], 777251816003  [UniProt]  [KEGG]zeta-toxinTA
41SSUSC84_0842911110..911586 [-], 477251816004  [UniProt]  [KEGG]antidote epsilon proteinTA
42SSUSC84_0843911656..912009 [-], 354251816005  [UniProt]  [KEGG]hypothetical protein
43SSUSC84_0844911996..912385 [-], 390251816006  [UniProt]  [KEGG]hypothetical protein
44SSUSC84_0845912382..912609 [-], 228251816007  [UniProt]  [KEGG]hypothetical protein
45SSUSC84_0846912663..913739 [-], 1077251816008  [UniProt]  [KEGG]DNA primase
46SSUSC84_0847913778..914416 [-], 639251816009  [UniProt]  [KEGG]putative exported protein
47SSUSC84_0848914923..915426 [+], 504pseudogene transposase (fragment)
48salR915817..916416 [-], 600251816010  [UniProt]  [KEGG]response regulator protein
49salK916394..917902 [-], 1509251816011  [UniProt]  [KEGG]sensor histidine kinase
50SSUSC84_0852917906..918595 [-], 690251816012  [UniProt]  [KEGG]putative membrane protein
51SSUSC84_0853918605..919324 [-], 720251816013  [UniProt]  [KEGG]putative membrane protein
52SSUSC84_0854919302..920216 [-], 915251816014  [UniProt]  [KEGG]lantibiotic transport ATP-binding protein
53SSUSC84_0855920188..922263 [-], 2076251816015  [UniProt]  [KEGG]lantibiotic transport protein
54SSUSC84_0856922269..932752 [-], 10484pseudogene lantibiotic modifying enzyme (pseudogene)
55SSUSC84_0857923753..924205 [+], 453pseudogene DNA recombinase (fragment)
56SSUSC84_0858924206..924622 [+], 417251816016  [UniProt]  [KEGG]Recombinase
57SSUSC84_0859924624..926186 [+], 1563251816017  [UniProt]  [KEGG]DNA recombinase
58SSUSC84_0860926329..926553 [+], 225251816018  [UniProt]  [KEGG]putative DNA-binding proteinTA
59SSUSC84_0861926568..927437 [+], 870251816019  [UniProt]  [KEGG]hypothetical proteinTA
60SSUSC84_0862927418..928152 [+], 735251816020  [UniProt]  [KEGG]putative methyltransferase
61aadE928185..929048 [+], 864251816021  [UniProt]  [KEGG]streptomycin adenylyltransferase
62SSUSC84_0864929092..929619 [+], 528251816022  [UniProt]  [KEGG]putative adenine phosphoribosyltransferase
63SSUSC84_0865929847..931166 [+], 1320251816023  [UniProt]  [KEGG]putative transposase
64SSUSC84_0866932836..933009 [-], 174251816024  [UniProt]  [KEGG]lantibiotic precursor
65SSUSC84_0868933350..933646 [-], 297251816025  [UniProt]  [KEGG]putative membrane protein
66SSUSC84_0869933660..933959 [-], 300251816026  [UniProt]  [KEGG]hypothetical protein
67SSUSC84_0870934030..940854 [-], 6825251816027  [UniProt]  [KEGG]hypothetical protein
68SSUSC84_0871940904..941455 [-], 552251816028  [UniProt]  [KEGG]hypothetical protein
69SSUSC84_0872941439..941630 [-], 192251816029  [UniProt]  [KEGG]hypothetical protein
70SSUSC84_0873941631..946526 [-], 4896251816030  [UniProt]  [KEGG]putative glucan-binding surface-anchored protein
71SSUSC84_0874946698..947288 [+], 591251816031  [UniProt]  [KEGG]hypothetical protein
72SSUSC84_0875947285..948130 [+], 846251816032  [UniProt]  [KEGG]hypothetical protein
73SSUSC84_0876948193..950994 [-], 2802251816033  [UniProt]  [KEGG]hypothetical protein
74SSUSC84_0877950996..953326 [-], 2331251816034  [UniProt]  [KEGG]hypothetical protein
75SSUSC84_0878953304..953657 [-], 354251816035  [UniProt]  [KEGG]putative membrane protein
76SSUSC84_0879953719..954573 [-], 855251816036  [UniProt]  [KEGG]putative TrbL/VirB6 plasmid conjugal transfer protein
77SSUSC84_0880954592..954834 [-], 243251816037  [UniProt]  [KEGG]putative membrane protein
78SSUSC84_0881954852..956669 [-], 1818251816038  [UniProt]  [KEGG]putative conjugal transfer protein TraG
79SSUSC84_0882956669..957157 [-], 489251816039  [UniProt]  [KEGG]hypothetical protein
80SSUSC84_0883957235..957819 [-], 585251816040  [UniProt]  [KEGG]CAAX amino terminal protease family protein
81SSUSC84_0884957822..958055 [-], 234251816041  [UniProt]  [KEGG]hypothetical protein
82SSUSC84_0885958064..958447 [-], 384251816042  [UniProt]  [KEGG]hypothetical protein
83SSUSC84_0886958458..958886 [-], 429251816043  [UniProt]  [KEGG]hypothetical protein
84SSUSC84_0887958870..960225 [-], 1356251816044  [UniProt]  [KEGG]C-5 cytosine-specific DNA methylase
85SSUSC84_0889960374..961192 [-], 819251816045  [UniProt]  [KEGG]replication initiator protein A protein
86SSUSC84_0890961189..961362 [-], 174251816046  [UniProt]  [KEGG]hypothetical protein
87rplL961561..961926 [-], 366251816047  [UniProt]  [KEGG]50S ribosomal protein L7/L12
88rplJ961992..962486 [-], 495251816048 50S ribosomal protein L10
89topA963063..965156 [-], 2094251816049 DNA topoisomerase I
90SSUSC84_0894965249..966091 [-], 843251816050 SMF family protein
91maa966150..966707 [-], 558251816051 maltose O-acetyltransferase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins79Fasta
(1) Palmieri C; Varaldo PE; Facinelli B (2011). Streptococcus suis, an Emerging Drug-Resistant Animal and Human Pathogen. Front Microbiol. 0.246527778. [PudMed:22275909]
(2) Holden MT; Hauser H; Sanders M; Ngo TH; Cherevach I; Cronin A; Goodhead I; Mungall K; Quail MA; Price C; Rabbinowitsch E; Sharp S; Croucher NJ; Chieu TB; Mai NT; Diep TS; Chinh NT; Kehoe M; Leigh JA; Ward PN; Dowson CG; Whatmore AM; Chanter N; Iversen P; Gottschalk M; Slater JD; Smith HE; Spratt BG; Xu J; Ye C; Bentley S; Barrell BG; Schultsz C; Maskell DJ; Parkhill J (2009). Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis. PLoS One. 4(7):e6072. [PudMed:19603075]