ICEberg
ICEberg ID235
NamePFGI-1
FamilyPAPI-1
OrganismPseudomonas fluorescens Pf-5
Size (bp)115119
GC content [Genome] (%)56 [63]
Insertion sitetRNA-Lys (PFL_4753)
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP000076 (complete ICE sequence in this genome)
Replicon chromosome (7074893 bp, Project:327) [NC_004129]
Genome coordinates5378468..5493586
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of PFGI-1 form CP000076
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1PFL_46565373886..5376759 [-], 287468346297 pyoverdine synthetase, putative
2PFL_46575376781..5378019 [-], 123968346298 aminotransferase, class III
3PFL_46595379490..5380242 [+], 75368346299  [UniProt]  [KEGG]conserved hypothetical protein
4PFL_46605380239..5380622 [+], 38468346300  [UniProt]  [KEGG]hypothetical protein
5PFL_46615381181..5381870 [+], 69068348675  [UniProt]  [KEGG]conserved hypothetical protein
6PFL_46625381933..5382538 [+], 60668348674  [UniProt]  [KEGG]gp46
7dnaB5382535..5383884 [+], 135068346301  [UniProt]  [KEGG]replicative DNA helicase
8PFL_46645384059..5384577 [+], 51968348676  [UniProt]  [KEGG]conserved hypothetical protein
9PFL_46655384686..5385801 [+], 111668346302  [UniProt]  [KEGG]nucleoid-associated family protein
10PFL_46665386147..5387820 [+], 167468346303  [UniProt]  [KEGG]conserved hypothetical protein
11PFL_46675387862..5388488 [+], 62768346304  [UniProt]  [KEGG]conserved hypothetical protein
12PFL_46685388485..5389765 [+], 128168346305  [UniProt]  [KEGG]conserved hypothetical protein
13PFL_46695390321..5391052 [+], 73268346306  [UniProt]  [KEGG]conserved hypothetical protein
14PFL_46705391049..5391594 [+], 54668346307  [UniProt]  [KEGG]conserved hypothetical protein
15PFL_46715391609..5392115 [+], 50768346308  [UniProt]  [KEGG]single-strand binding protein, putative
16topA5393086..5395002 [+], 191768346309  [UniProt]  [KEGG]DNA topoisomerase I
17PFL_46735395092..5396972 [+], 188168346310  [UniProt]  [KEGG]hypothetical protein
18PFL_46745396984..5398936 [+], 195368346311  [UniProt]  [KEGG]helicase, SNF2 family
19PFL_46755399717..5400862 [+], 114668346312  [UniProt]  [KEGG]pilL proteinVF
20pilN5400859..5402700 [+], 184268346313  [UniProt]  [KEGG]type IV pilus protein, PilN
21PFL_46775402711..5404045 [+], 133568346314  [UniProt]  [KEGG]PilO, putative
22PFL_46785404562..5406094 [+], 153368346315  [UniProt]  [KEGG]type IV pilus biogenesis protein PilQ
23PFL_46795406087..5407253 [+], 116768346316  [UniProt]  [KEGG]integral membrane protein, putative
24pilS5407275..5407790 [+], 51668346317  [UniProt]  [KEGG]type IVB pilus biosythesis protein PliS
25PFL_46815407796..5408752 [+], 95768348677  [UniProt]  [KEGG]type IV pilus biosythesis protein
26PFL_46825408742..5409953 [+], 121268346318  [UniProt]  [KEGG]type IV prepilin PilV, putative
27PFL_46835409968..5410408 [+], 44168348678  [UniProt]  [KEGG]pilM protein, putative
28PFL_46845412717..5413166 [+], 45068346319  [UniProt]  [KEGG]conserved hypothetical protein
29PFL_46855414388..5414708 [+], 32168346320  [UniProt]  [KEGG]hypothetical protein
30PFL_46865415056..5415187 [+], 13268346321  [UniProt]  [KEGG]conserved hypothetical protein
31PFL_46875415235..5415528 [-], 29468346322  [UniProt]  [KEGG]hypothetical protein
32PFL_46885415949..5416203 [+], 25568346323  [UniProt]  [KEGG]conserved hypothetical protein
33PFL_46895416895..5418334 [+], 144068346324  [UniProt]  [KEGG]conserved hypothetical protein
34PFL_46905418420..5420669 [+], 225068346325  [UniProt]  [KEGG]conserved hypothetical protein
35PFL_46915420909..5421361 [+], 45368346326  [UniProt]  [KEGG]ultraviolet light resistance protein A
36PFL_46925421354..5422625 [+], 127268346327  [UniProt]  [KEGG]ultraviolet light resistance protein B
37PFL_46935423444..5424187 [+], 74468346328  [UniProt]  [KEGG]conserved hypothetical protein
38PFL_46945424172..5424723 [+], 55268348680  [UniProt]  [KEGG]conserved hypothetical protein
39PFL_46955424720..5425226 [+], 50768348679  [UniProt]  [KEGG]conserved hypothetical protein
40PFL_46965425475..5427691 [+], 221768346329  [UniProt]  [KEGG]conserved hypothetical protein
41PFL_46975427701..5428450 [+], 75068346330  [UniProt]  [KEGG]conserved hypothetical protein
42PFL_46985428460..5429920 [+], 146168346331  [UniProt]  [KEGG]conserved hypothetical protein
43PFL_46995429936..5430238 [+], 30368346332  [UniProt]  [KEGG]hypothetical protein
44PFL_47005430458..5430811 [+], 35468348682  [UniProt]  [KEGG]conserved hypothetical protein TIGR01690
45PFL_47015430808..5431047 [+], 24068346333  [UniProt]  [KEGG]conserved hypothetical protein
46PFL_47025431062..5431400 [+], 33968346334  [UniProt]  [KEGG]conserved hypothetical protein
47PFL_47035431796..5432440 [+], 64568346335  [UniProt]  [KEGG]conserved hypothetical protein
48PFL_47045432437..5433348 [+], 91268348681  [UniProt]  [KEGG]conserved hypothetical protein
49PFL_47055433332..5434828 [+], 149768346336  [UniProt]  [KEGG]conserved hypothetical protein
50PFL_47065435245..5438169 [+], 292568346337  [UniProt]  [KEGG]lipoprotein, putative
51PFL_47075438166..5438471 [+], 30668346338  [UniProt]  [KEGG]conserved hypothetical protein
52PFL_47085438468..5439127 [+], 66068348683  [UniProt]  [KEGG]thioredoxin domain protein, DsbA family
53PFL_47095441688..5442116 [+], 42968348685  [UniProt]  [KEGG]conserved hypothetical protein
54PFL_47105442113..5443051 [+], 93968348684  [UniProt]  [KEGG]conserved hypothetical protein
55PFL_47115443111..5444424 [+], 131468346339  [UniProt]  [KEGG]conserved hypothetical protein
56PFL_47125444784..5446316 [+], 153368346340  [UniProt]  [KEGG]membrane protein, putative
57PFL_47135446848..5447126 [+], 27968346341  [UniProt]  [KEGG]conserved hypothetical protein
58PFL_47145449040..5449906 [+], 86768348686  [UniProt]  [KEGG]hydrolase, alpha/beta fold family
59PFL_47155449980..5451563 [-], 158468346342  [UniProt]  [KEGG]GGDEF domain protein
60PFL_47165452173..5452583 [+], 41168346343  [UniProt]  [KEGG]response regulator
61PFL_47175453713..5454210 [-], 49868346344  [UniProt]  [KEGG]conserved hypothetical protein
62PFL_47185454348..5455277 [-], 93068346345  [UniProt]  [KEGG]ZIP zinc transporter family protein
63PFL_47195455506..5456390 [-], 88568346346  [UniProt]  [KEGG]Mn-containing catalase
64PFL_47205456952..5457452 [+], 50168346347  [UniProt]  [KEGG]CinA domain protein
65PFL_47215457984..5458430 [+], 44768343233  [UniProt]  [KEGG]conserved hypothetical protein
66PFL_47225458655..5459881 [-], 122768346348  [UniProt]  [KEGG]glutathione-dependent formaldehyde dehydrogenase, putative
67PFL_47245462057..5462374 [+], 31868346349  [UniProt]  [KEGG]conserved hypothetical protein
68PFL_47255462417..5463505 [-], 108968346350  [UniProt]  [KEGG]glutamyl aminopeptidase, M42 family
69PFL_47265463522..5464685 [-], 116468346351  [UniProt]  [KEGG]Glutamate-cysteine ligase family 2(GCS2) family
70PFL_47275464698..5465678 [-], 98168346352  [UniProt]  [KEGG]modification methylase, HemK family
71PFL_47285465694..5467064 [-], 137168346353  [UniProt]  [KEGG]conserved hypothetical protein
72PFL_47295467276..5467890 [+], 61568346354  [UniProt]  [KEGG]conserved hypothetical protein
73PFL_47305467980..5468483 [+], 50468346355  [UniProt]  [KEGG]lipoprotein, putative
74PFL_47315468575..5468952 [+], 37868346356  [UniProt]  [KEGG]hydrolase, NUDIX family
75cyoD5469413..5469751 [-], 33968346357  [UniProt]  [KEGG]cytochrome o ubiquinol oxidase, subunit IV
76cyoC5469753..5470367 [-], 61568346358  [UniProt]  [KEGG]cytochrome o ubiquinol oxidase, subunit III
77cyoB5470370..5472343 [-], 197468346359  [UniProt]  [KEGG]cytochrome o ubiquinol oxidase, subunit I
78cyoA5472333..5473244 [-], 91268346360  [UniProt]  [KEGG]cytochrome o ubiquinol oxidase, subunit II
79PFL_47365474257..5474814 [+], 55868346361  [UniProt]  [KEGG]hypothetical protein
80PFL_47375475300..5476157 [+], 85868346362  [UniProt]  [KEGG]oxidoreductase, short chain dehydrogenase/reductase family
81PFL_47385476352..5476867 [-], 51668346363  [UniProt]  [KEGG]conserved hypothetical protein
82PFL_47395477036..5477593 [+], 55868346364  [UniProt]  [KEGG]clp protease, putative
83PFL_47405477696..5478376 [+], 68168346365  [UniProt]  [KEGG]conserved hypothetical protein
84PFL_47415478387..5479724 [+], 133868346366  [UniProt]  [KEGG]sodium/hydrogen exchanger family protein
85PFL_47425480448..5481608 [+], 116168346367  [UniProt]  [KEGG]glutathione-dependent formaldehyde dehydrogenase, putative
86PFL_47435481629..5482561 [+], 93368346368  [UniProt]  [KEGG]conserved hypothetical protein
87PFL_47445482558..5483334 [+], 77768346369  [UniProt]  [KEGG]endonuclease/exonuclease/phosphatase family protein
88PFL_47455483331..5484524 [+], 119468346370  [UniProt]  [KEGG]phospholipase family protein
89PFL_47465484934..5485197 [+], 26468346371  [UniProt]  [KEGG]hypothetical protein
90PFL_47475485205..5485960 [-], 75668346372  [UniProt]  [KEGG]prolyl oligopeptidase family protein
91PFL_47485485950..5487047 [-], 109868346373  [UniProt]  [KEGG]conserved hypothetical protein
92PFL_47495487576..5487755 [+], 18068346374  [UniProt]  [KEGG]conserved hypothetical protein
93PFL_47505487797..5488909 [-], 111368346375  [UniProt]  [KEGG]sensor histidine kinase
94PFL_47515489951..5491837 [+], 188768346376  [UniProt]  [KEGG]conserved hypothetical protein
95PFL_47525491834..5493171 [+], 133868346377  [UniProt]  [KEGG]site-specific recombinase, phage integrase family
96PFL_47545493650..5494351 [-], 70268346378 exsB protein
97PFL_47555494353..5495000 [-], 64868346379 radical activating enzyme
98PFL_47565495167..5495979 [-], 81368346380 conserved hypothetical protein
99pal5495986..5496483 [-], 49868346381 peptidoglycan-associated lipoprotein
100PFL_47585496537..5497838 [-], 130268346382 tolB protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins87Fasta
(1) Mavrodi DV; Loper JE; Paulsen IT; Thomashow LS (2009). Mobile genetic elements in the genome of the beneficial rhizobacterium Pseudomonas fluorescens Pf-5. BMC Microbiol. 9:8. [PudMed:19144133]