ICEberg
ICEberg ID310
NameICESpsHKU1003-1
FamilyTn916
OrganismStaphylococcus pseudintermedius HKU10-03
Size (bp)18031
GC content [Genome] (%)38.7 [37]
Insertion siteAT rich regions
FunctionTetracycline resistance
Species that ICE can be transferred to-
Nucleotide SequenceCP002439 (complete ICE sequence in this genome)
Replicon[NC_014925]
Genome coordinates2195642..2213672
Link to view genome context of this ICE in the genome browser
in_silico This is a putative ICE identified in this study by Blast.
Complete gene list of ICESpsHKU1003-1 form CP002439
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1SPSINT_21042192383..2193777 [+], 1395317163089 Sodium/glycine symporter GlyP
2SPSINT_21052194155..2194583 [+], 429317163090 General stress protein 26
3SPSINT_21062194854..2194982 [+], 129317163091 hypothetical protein
4SPSINT_21072195131..2195694 [+], 564317163092 putative Abi-alpha protein
5SPSINT_21082195816..2197033 [-], 1218317163093  [UniProt]  [KEGG]Tn916 ORF3-like transposon integrase
6SPSINT_21092197115..2197318 [-], 204317163094  [UniProt]  [KEGG]Tn916 ORF1- like transposon excisionase
7SPSINT_21102198006..2198428 [-], 423317163095  [UniProt]  [KEGG]Tn916-associated hypothetical protein
8SPSINT_21112198932..2199285 [+], 354317163096  [UniProt]  [KEGG]Tn916-associated transcriptional regulator
9SPSINT_21122199631..2201550 [-], 1920317163097  [UniProt]  [KEGG]Tetracycline resistance protein TetMAR
10SPSINT_21132201927..2202859 [-], 933317163098  [UniProt]  [KEGG]conserved hypothetical protein
11SPSINT_21142202856..2203857 [-], 1002317163099  [UniProt]  [KEGG]lipoprotein, NLP/P60 familyVF
12SPSINT_21152203854..2206031 [-], 2178317163100  [UniProt]  [KEGG]hypothetical membrane protein
13SPSINT_21162206034..2208481 [-], 2448317163101  [UniProt]  [KEGG]hypothetical protein
14SPSINT_21172208465..2208857 [-], 393317163102  [UniProt]  [KEGG]Tn916-associated hypothetical protein
15SPSINT_21182208946..2209443 [-], 498317163103  [UniProt]  [KEGG]Antirestriction protein
16SPSINT_21192209560..2209781 [-], 222317163104  [UniProt]  [KEGG]Conjugation related protein
17SPSINT_21202209824..2211029 [-], 1206317163105  [UniProt]  [KEGG]Tn916-associated transcriptional regulator
18SPSINT_21212211207..2212592 [-], 1386317163106  [UniProt]  [KEGG]Cell division FtsK/SpoIIIE protein
19SPSINT_21222212621..2213007 [-], 387317163107  [UniProt]  [KEGG]hypothetical protein
20SPSINT_21232213023..2213178 [-], 156317163108  [UniProt]  [KEGG]hypothetical protein
21SPSINT_21242213663..2213908 [+], 246317163109 hypothetical protein
22SPSINT_21252214798..2216657 [-], 1860317163110 hypothetical ABC transporter
23SPSINT_21262216638..2218431 [-], 1794317163111 ABC transporter, ATP-binding/permease protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins16Fasta
Identified as part of this study from CP002439