ICEberg
ICEberg ID311
NameICESsu05ZYH33-1
FamilyUnclassified
OrganismStreptococcus suis 05ZYH33
Size (bp)88851
GC content [Genome] (%)36.8 [41]
Insertion siteTTATTTAAGAGTAAC
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP000407 (complete ICE sequence in this genome)
Replicon chromosome (2096309 bp, Project:17153) [NC_009442]
Genome coordinates872967..961817
Link to view genome context of this ICE in the genome browser
experimental This is a ICE derived from experimental literature.
Complete gene list of ICESsu05ZYH33-1 form CP000407
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1SSU05_0899868566..869609 [-], 1044145689359 hypothetical protein
2SSU05_0900869635..870474 [-], 840145689360 Uncharacterized protein conserved in bacteria
3SSU05_0901870548..871882 [-], 1335145689361 NAD(FAD)-utilizing enzyme possibly involved in translation
4SSU05_0902872078..872827 [-], 750145689362 Predicted hydrolase (HAD superfamily)
5SSU05_0903873012..874223 [-], 1212145689363 site-specific recombinase, phage integrase family
6SSU05_0904874234..874461 [-], 228145689364 hypothetical protein
7SSU05_0905874740..874961 [-], 222145689365 transcriptional regulator, Cro/CI family
8SSU05_0906875685..876392 [-], 708145689366 NisK
9SSU05_0907876377..877060 [-], 684145689367 NisR
10SSU05_0908877091..877744 [-], 654145689368 hypothetical protein
11SSU05_0909877796..878593 [-], 798145689369 hypothetical protein
12SSU05_0910878577..879293 [-], 717145689370 putative transport ATP-binding protein
13SSU05_0911879314..881536 [-], 2223145689371 ABC transporter, NBP/MSD fusion protein
14SSU05_0912881803..882948 [-], 1146145689372 putative asparagine synthetase
15SSU05_0913884460..886325 [-], 1866145689373 Chromosome segregation ATPase
16SSU05_0914886312..886677 [-], 366145689374 unknown protein
17SSU05_0915886677..887252 [-], 576145689375 hypothetical protein
18SSU05_0916887407..888303 [+], 897145689376 putative Abi-alpha protein
19SSU05_0917888425..889642 [-], 1218145689377  [UniProt]  [KEGG]Tn916, transposase
20SSU05_0918889724..889927 [-], 204145689378  [UniProt]  [KEGG]hypothetical protein
21SSU05_0919890615..891046 [-], 432145689379  [UniProt]  [KEGG]hypothetical protein
22SSU05_0920891541..891894 [+], 354145689380  [UniProt]  [KEGG]Tn916, transcriptional regulator, putative
23SSU05_0922892240..894174 [-], 1935145689382  [UniProt]  [KEGG]Translation elongation factor (GTPases)AR
24SSU05_0921893067..893219 [+], 153145689381  [UniProt]  [KEGG]hypothetical protein
25SSU05_0923894536..895468 [-], 933145689383  [UniProt]  [KEGG]Tn916, hypothetical protein
26SSU05_0924895465..896466 [-], 1002145689384  [UniProt]  [KEGG]hypothetical proteinVF
27SSU05_0925896463..898640 [-], 2178145689385  [UniProt]  [KEGG]membrane protein, putative
28SSU05_0926898643..901099 [-], 2457145689386  [UniProt]  [KEGG]hypothetical protein
29SSU05_0927901074..901580 [-], 507145689387  [UniProt]  [KEGG]hypothetical protein
30SSU05_0928901555..902052 [-], 498145689388  [UniProt]  [KEGG]hypothetical protein
31SSU05_0929902169..902390 [-], 222145689389  [UniProt]  [KEGG]hypothetical protein
32SSU05_0930902433..903638 [-], 1206145689390  [UniProt]  [KEGG]Tn916, transcriptional regulator, putative
33SSU05_0931903816..905201 [-], 1386145689391  [UniProt]  [KEGG]hypothetical protein
34SSU05_0932905230..905616 [-], 387145689392  [UniProt]  [KEGG]hypothetical protein
35SSU05_0933905632..905946 [-], 315145689393  [UniProt]  [KEGG]hypothetical protein
36SSU05_0934907006..908550 [-], 1545145689394 DNA helicase
37SSU05_0935908507..910594 [-], 2088145689395 hypothetical protein
38SSU05_0936910591..911367 [-], 777145689396 Signal recognition particle GTPase
39SSU05_0937911367..911873 [-], 507145689397 Predicted transcriptional regulator
40SSU05_0938911913..912266 [-], 354145689398 ATPases with chaperone activity, ATP-binding subunit
41SSU05_0939912253..912642 [-], 390145689399 Methyl-accepting chemotaxis protein
42SSU05_0940912639..912866 [-], 228145689400 hypothetical protein
43SSU05_0941912920..913996 [-], 1077145689401 DNA primase (type)
44SSU05_0942914035..914673 [-], 639145689402 hypothetical protein
45SSU05_0943916074..916673 [-], 600145689403 DNA-binding response regulator, putative
46SSU05_0944916651..917841 [-], 1191145689404 possible two-component sensor histidine kinase
47SSU05_0945918568..918852 [-], 285145689405 hypothetical protein
48SSU05_0946919557..920471 [-], 915145689406 cdd4
49SSU05_0947920443..921546 [-], 1104145689407 ABC-type multidrug transport system, ATPase and permease component
50SSU05_0948921488..922372 [-], 885145689408 cytolysin B transport protein
51SSU05_0949922525..923637 [-], 1113145689409 lantibiotic modifying enzyme
52SSU05_0950923737..923856 [+], 120145689410 hypothetical protein
53SSU05_0951923964..924461 [+], 498145689411 DNA recombinase, putative
54SSU05_0952924462..924878 [+], 417145689412 Recombinase
55SSU05_0953924880..926442 [+], 1563145689413 DNA recombinase, putative
56SSU05_0954926585..926809 [+], 225145689414 hypothetical protein
57SSU05_0955926824..927693 [+], 870145689415 hypothetical protein
58SSU05_0956927674..928408 [+], 735145689416 hypothetical protein
59SSU05_0957928441..929304 [+], 864145689417 putative aminoglycoside 6-adenylyltansferase
60SSU05_0958929348..929875 [+], 528145689418 putative adenine phosphoribosyltransferase
61SSU05_0959930103..931422 [+], 1320145689419 putative transposase
62SSU05_0960931611..933008 [-], 1398145689420 SalB
63SSU05_0961933916..934215 [-], 300145689421 hypothetical protein
64SSU05_0962934286..941110 [-], 6825145689422 SNF2 family protein
65SSU05_0963941160..941714 [-], 555145689423 hypothetical protein
66SSU05_0964941695..941886 [-], 192145689424 hypothetical protein
67SSU05_0965941887..946839 [-], 4953145689425 agglutinin receptor
68SSU05_0966946954..947544 [+], 591145689426 Predicted transcriptional regulator
69SSU05_0967947541..948386 [+], 846145689427 Uncharacterized conserved protein
70SSU05_0968948449..951250 [-], 2802145689428 Tn5252, Orf28
71SSU05_0969951252..953603 [-], 2352145689429 Type IV secretory pathway, VirB4 component
72SSU05_0970953560..954015 [-], 456145689430 hypothetical protein
73SSU05_0971953975..954829 [-], 855145689431 ABC-type cobalt transport system, permease component CbiQ and related transporters
74SSU05_0972954848..955069 [-], 222145689432 hypothetical protein
75SSU05_0973955109..956926 [-], 1818145689433 Type IV secretory pathway, VirD4 component
76SSU05_0974956926..957495 [-], 570145689434 hypothetical protein
77SSU05_0975957492..958082 [-], 591145689435 protease, putative
78SSU05_0976958079..958318 [-], 240145689436 hypothetical protein
79SSU05_0977958321..958710 [-], 390145689437 Arsenate reductase and related proteins, glutaredoxin family
80SSU05_0978958715..959143 [-], 429145689438 hypothetical protein
81SSU05_0979959127..960482 [-], 1356145689439 C-5 cytosine-specific DNA methylase
82SSU05_0980960534..960638 [-], 105145689440 hypothetical protein
83SSU05_0981960631..961449 [-], 819145689441 hypothetical protein
84SSU05_0982961446..961631 [-], 186145689442 hypothetical protein
85SSU05_0983961818..962183 [-], 366145689443 Ribosomal protein L7/L12
86SSU05_0984962249..962779 [-], 531145689444 Ribosomal protein L10
87SSU05_0985963320..965461 [-], 2142145689445 DNA topoisomerase I
88SSU05_0986965515..965652 [-], 138145689446 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake
89SSU05_0987965671..965970 [-], 300145689447 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake
90SSU05_0988965967..966443 [-], 477145689448 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins17Fasta
(1) Palmieri C; Varaldo PE; Facinelli B (2011). Streptococcus suis, an Emerging Drug-Resistant Animal and Human Pathogen. Front Microbiol. 0.246527778. [PudMed:22275909]
(2) Chen C; Tang J; Dong W; Wang C; Feng Y; Wang J; Zheng F; Pan X; Liu D; Li M; Song Y; Zhu X; Sun H; Feng T; Guo Z; Ju A; Ge J; Dong Y; Sun W; Jiang Y; Wang J; Yan J; Yang H; Wang X; Gao GF; Yang R; Wang J; Yu J (2007). A glimpse of streptococcal toxic shock syndrome from comparative genomics of S. suis 2 Chinese isolates. PLoS One. 2(3):e315. [PudMed:17375201]