ICEberg
ICEberg ID317
NameTn2008
FamilyTn5253
OrganismStreptococcus pneumoniae CGSP14
Size (bp)67632
GC content [Genome] (%)34 [39]
Insertion site-
FunctionChloramphenicol, erythromycin, streptothricin and kanamycin resistance
Species that ICE can be transferred to-
Nucleotide SequenceCP001033 (complete ICE sequence in this genome)
Replicon chromosome (2209198 bp, Project:29179) [NC_010582]
Genome coordinates1259712..1327343
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of Tn2008 form CP001033
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1SPCG_12731255821..1259432 [-], 3612182629577 glutamate dehydrogenase
2SPCG_12741259712..1260899 [-], 1188182629578  [UniProt]  [KEGG]site-specific recombinase
3SPCG_12751260871..1261179 [-], 309182629579  [UniProt]  [KEGG]hypothetical protein
4SPCG_12761261741..1263570 [-], 1830182629580  [UniProt]  [KEGG]Tn5252, relaxase
5SPCG_12771263557..1263922 [-], 366182629581  [UniProt]  [KEGG]Tn5252, Orf 9 protein
6SPCG_12781263927..1264283 [-], 357182629582  [UniProt]  [KEGG]Tn5252, Orf 10 protein
7SPCG_12791264667..1264921 [-], 255182629583  [UniProt]  [KEGG]hypothetical protein
8SPCG_12801264987..1268991 [-], 4005182629584  [UniProt]  [KEGG]DNA-dependent ATPase I and helicase II
9SPCG_12811269113..1269499 [-], 387182629585  [UniProt]  [KEGG]hypothetical protein
10SPCG_12821269571..1270521 [-], 951182629586  [UniProt]  [KEGG]hypothetical protein
11SPCG_12831270606..1271724 [-], 1119182629587  [UniProt]  [KEGG]hypothetical protein
12SPCG_12841271986..1273821 [-], 1836182629588  [UniProt]  [KEGG]hypothetical protein
13SPCG_12851274199..1274477 [-], 279182629589  [UniProt]  [KEGG]hypothetical protein
14SPCG_12861274452..1275156 [-], 705182629590  [UniProt]  [KEGG]phosphoserine phosphatase
15SPCG_12871275209..1275775 [-], 567182629591  [UniProt]  [KEGG]hypothetical protein
16SPCG_12881275868..1276092 [-], 225182629592  [UniProt]  [KEGG]hypothetical protein
17SPCG_12891276181..1276798 [-], 618182629593  [UniProt]  [KEGG]hypothetical protein
18SPCG_12901277120..1277842 [-], 723182629594  [UniProt]  [KEGG]hypothetical protein
19SPCG_12911278159..1279094 [+], 936182629595  [UniProt]  [KEGG]putative replication initiation protein Rep(RC)
20SPCG_12921279959..1280609 [-], 651182629596  [UniProt]  [KEGG]chloramphenicol acetyltransferaseAR
21SPCG_12931280780..1281028 [-], 249182629597  [UniProt]  [KEGG]hypothetical protein
22SPCG_12941281267..1282055 [-], 789182629598  [UniProt]  [KEGG]hypothetical protein
23SPCG_12951282531..1283289 [-], 759182629599  [UniProt]  [KEGG]hypothetical proteinTA
24SPCG_12961283289..1283765 [-], 477182629600  [UniProt]  [KEGG]transcriptional regulator, putativeTA
25SPCG_12971283835..1284107 [-], 273182629601  [UniProt]  [KEGG]hypothetical protein
26SPCG_12981284145..1284528 [-], 384182629602  [UniProt]  [KEGG]hypothetical protein
27SPCG_12991284525..1284758 [-], 234182629603  [UniProt]  [KEGG]hypothetical protein
28SPCG_13001284809..1285894 [-], 1086182629604  [UniProt]  [KEGG]hypothetical protein
29SPCG_13011285904..1286545 [-], 642182629605  [UniProt]  [KEGG]parvulin-like peptidyl-prolyl isomerase
30SPCG_13021286705..1286902 [+], 198182629606  [UniProt]  [KEGG]hypothetical protein
31SPCG_13031286916..1287233 [-], 318182629607  [UniProt]  [KEGG]hypothetical protein
32SPCG_13041287226..1287510 [-], 285182629608  [UniProt]  [KEGG]hypothetical protein
33SPCG_13051287585..1293818 [-], 6234182629609  [UniProt]  [KEGG]SNF2 family protein
34SPCG_13061293851..1294261 [-], 411182629610  [UniProt]  [KEGG]hypothetical protein
35SPCG_13071294413..1295108 [-], 696182629611  [UniProt]  [KEGG]hypothetical protein
36SPCG_13081295217..1298030 [-], 2814182629612  [UniProt]  [KEGG]hypothetical protein
37SPCG_13091298042..1300357 [-], 2316182629613  [UniProt]  [KEGG]hypothetical protein
38SPCG_13101300347..1300709 [-], 363182629614  [UniProt]  [KEGG]hypothetical protein
39SPCG_13111300763..1301617 [-], 855182629615  [UniProt]  [KEGG]hypothetical protein
40SPCG_13121301634..1301876 [-], 243182629616  [UniProt]  [KEGG]hypothetical protein
41SPCG_13131301897..1303777 [-], 1881182629617  [UniProt]  [KEGG]hypothetical protein
42SPCG_13141303774..1304283 [-], 510182629618  [UniProt]  [KEGG]hypothetical protein
43SPCG_13151304252..1304551 [-], 300182629619  [UniProt]  [KEGG]hypothetical protein
44SPCG_13161304834..1305670 [-], 837182629620  [UniProt]  [KEGG]hypothetical protein
45SPCG_13171305670..1306314 [-], 645182629621  [UniProt]  [KEGG]hypothetical protein
46SPCG_13181306549..1306668 [+], 120182629622  [UniProt]  [KEGG]hypothetical protein
47SPCG_13191306691..1307005 [+], 315182629623  [UniProt]  [KEGG]hypothetical protein
48SPCG_13201307021..1307407 [+], 387182629624  [UniProt]  [KEGG]hypothetical protein
49SPCG_13211307436..1308821 [+], 1386182629625  [UniProt]  [KEGG]hypothetical protein
50SPCG_13221308999..1310417 [+], 1419182629626  [UniProt]  [KEGG]hypothetical protein
51SPCG_13231310674..1311459 [+], 786182629627  [UniProt]  [KEGG]erythromycin ribosome methylaseAR
52SPCG_13241311797..1312339 [+], 543182629628  [UniProt]  [KEGG]streptothricin acetyltransferase
53SPCG_13251312432..1313226 [+], 795182629629  [UniProt]  [KEGG]aminoglycoside phosphotransferase type IIIAR
54SPCG_13261314404..1314643 [+], 240182629630  [UniProt]  [KEGG]omega2 protein
55SPCG_13271314900..1315637 [+], 738182629631  [UniProt]  [KEGG]rRNA methylaseAR
56SPCG_13281315992..1316546 [+], 555182629632  [UniProt]  [KEGG]resolvase
57SPCG_13291316550..1319468 [+], 2919182629633  [UniProt]  [KEGG]transposase
58SPCG_13301319524..1319763 [-], 240182629634  [UniProt]  [KEGG]hypothetical protein
59SPCG_13311320259..1320690 [+], 432182629635  [UniProt]  [KEGG]hypothetical protein
60SPCG_13321320687..1320917 [+], 231182629636  [UniProt]  [KEGG]hypothetical protein
61SPCG_13331321378..1321581 [+], 204182629637  [UniProt]  [KEGG]hypothetical protein
62SPCG_13341321663..1322625 [+], 963182629638  [UniProt]  [KEGG]hypothetical protein
63SPCG_13351322622..1322879 [+], 258182629639  [UniProt]  [KEGG]hypothetical protein
64SPCG_13361323094..1323681 [-], 588182629640  [UniProt]  [KEGG]hypothetical protein
65SPCG_13371323684..1323917 [-], 234182629641  [UniProt]  [KEGG]hypothetical protein
66SPCG_13381324303..1324752 [-], 450182629642  [UniProt]  [KEGG]hypothetical protein
67SPCG_13391324736..1326094 [-], 1359182629643  [UniProt]  [KEGG]type II DNA modification methyltransferase Spn5252IP
68SPCG_13401326193..1326972 [-], 780182629644  [UniProt]  [KEGG]replication initiator A, N-terminal
69SPCG_13411326969..1327142 [-], 174182629646  [UniProt]  [KEGG]hypothetical protein
70SPCG_13421327118..1327264 [+], 147182629645  [UniProt]  [KEGG]hypothetical protein
71rplL1327330..1327731 [+], 402182629647 50S ribosomal protein L7/L12
72rplJ1327788..1328351 [-], 564182629648 50S ribosomal protein L10
73trzA1328538..1330004 [-], 1467182629649 chlorohydrolase
74SPCG_13461330099..1331886 [-], 1788182629650 ABC transporter, ATP-binding/permease protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins69Fasta
(1) Ding F; Tang P; Hsu MH; Cui P; Hu S; Yu J; Chiu CH (2009). Genome evolution driven by host adaptations results in a more virulent and antimicrobial-resistant Streptococcus pneumoniae serotype 14. BMC Genomics. 10:158. [PudMed:19361343]