ICEberg
ICEberg ID329
NameTn6079
FamilyTn916
OrganismUncultured bacterium MID12
Size (bp)28411
GC content [Genome] (%)38.2
Insertion siteAT rich regions
FunctionTetracycline and erythromycin resistance
Species that ICE can be transferred to-
Nucleotide SequenceGU951538 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates462..28872
Link to view genome context of this ICE in the genome browser
search genbank This ICE is derived from GenBank without published report.
Complete gene list of Tn6079 form GU951538
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1MID12_1682..3804 [+], 3123296777655  [UniProt] hypothetical protein
2MID12_23817..3966 [+], 150296777656  [UniProt] Tn916-like orf24 protein
3MID12_34043..4369 [+], 327296777657  [UniProt] Tn916-like orf23 protein
4MID12_44385..4768 [+], 384296777658  [UniProt] Tn916-like orf22 protein
5MID12_54870..5634 [+], 765296777659  [UniProt] putative metallo-beta-lactamase domain protein
6MID12_65733..7124 [+], 1392296777660  [UniProt] Tn916-like orf21 protein
7MID12_77219..7608 [+], 390296777661  [UniProt] hypothetical protein
8MID12_87968..8957 [+], 990296777662  [UniProt] Tn916 orf20 protein
9MID12_99000..9221 [+], 222296777663  [UniProt] Tn916 orf19 protein
10MID12_109338..9835 [+], 498296777664  [UniProt] Tn916 orf18 protein
11MID12_119810..10316 [+], 507296777665  [UniProt] Tn916 orf17 protein
12MID12_1210300..12747 [+], 2448296777666  [UniProt] Tn916-like orf16 protein
13MID12_1312816..14927 [+], 2112296777667  [UniProt] Tn916-like orf15 protein
14MID12_1414924..15805 [+], 882296777668  [UniProt] Tn916-like orf14 proteinVF
15MID12_1515802..16737 [+], 936296777669  [UniProt] Tn916-like orf13 protein
16MID12_1617012..17098 [+], 87296777670  [UniProt] Tn916-like orf12 protein
17tet(M)17114..19033 [+], 1920296777671  [UniProt] tetracycline resistant ribosomal protection proteinAR
18tet(L)19131..20504 [+], 1374296777672  [UniProt] tetracycline resistent efflux proteinAR
19pre/mob21068..22330 [+], 1263296777673  [UniProt] Pre/Mob protein
20repB22554..23474 [+], 921296777674  [UniProt] RepB protein
21MID12_2123497..24183 [-], 687296777675  [UniProt] IS1216-like transposase
22erm(T)24929..25663 [-], 735296777676  [UniProt] erythromycin rRNA methylase proteinAR
23erm(T) leader25723..25782 [-], 60296777678  [UniProt] erm(T) leader peptide
24MID12_2425884..26570 [-], 687296777677  [UniProt] IS1216-like transposase
25MID12_2526955..27206 [-], 252296777679  [UniProt] Tn916-like orf5 protein
26xis-tn27190..27393 [+], 204296777680  [UniProt] Tn916-like excisionase
27int-tn27475..28692 [+], 1218296777681  [UniProt] Tn916-like integrase protein
28rpmG28970..29119 [-], 150296777682 L33 50S ribosomal protein
29rpmF29135..29311 [-], 177296777683 L32 50S ribosomal protein
30hisS29628..30905 [+], 1278296777684 histidyl-tRNA synthetase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins27Fasta
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