ICEberg
ICEberg ID333
NameICE(Tn4371)6071
FamilyTn4371
OrganismThioalkalivibrio sp. HL-EbGR7
Size (bp)42540
GC content [Genome] (%)64.95 [65]
Insertion site-
FunctionPotassium transporter system
Species that ICE can be transferred to-
Nucleotide SequenceCP001339 (ICE sequence without defined boundaries in this genome)
Replicon chromosome (3464554 bp, Project:29177) [NC_011901]
Genome coordinates1988584..2031125
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of ICE(Tn4371)6071 form CP001339
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1Tgr7_18621984726..1984986 [-], 261219996341 hypothetical protein
2Tgr7_18631985176..1985412 [+], 237219996342 hypothetical protein
3Tgr7_18641985626..1988274 [-], 2649219996343 putative diguanylate cyclase
4Tgr7_18651988584..1989789 [+], 1206219996344  [UniProt]  [KEGG]integrase family protein
5Tgr7_18661989786..1990949 [+], 1164219996345  [UniProt]  [KEGG]protein of unknown function DUF1016
6Tgr7_18671991275..1991781 [+], 507219996346  [UniProt]  [KEGG]DNA repair protein RadCVF
7Tgr7_18681991850..1994306 [-], 2457219996347  [UniProt]  [KEGG]conserved hypothetical protein
8Tgr7_18691994701..1995525 [+], 825219996348  [UniProt]  [KEGG]protein of unknown function DUF932VF
9Tgr7_18701995606..1997660 [+], 2055219996349  [UniProt]  [KEGG]ParB domain protein nuclease
10Tgr7_18711997723..1997932 [+], 210219996350  [UniProt]  [KEGG]conserved hypothetical protein
11Tgr7_18721998065..1998499 [-], 435219996351  [UniProt]  [KEGG]conserved hypothetical protein
12Tgr7_18731999324..1999638 [+], 315219996352  [UniProt]  [KEGG]protein of unknown function DUF736
13Tgr7_18741999702..2000007 [-], 306219996353  [UniProt]  [KEGG]transcriptional regulator, XRE family
14Tgr7_18752000251..2000601 [+], 351219996354  [UniProt]  [KEGG]putative lipoprotein
15Tgr7_18762000910..2001671 [+], 762219996355  [UniProt]  [KEGG]conserved hypothetical protein
16Tgr7_18772001755..2002036 [+], 282219996356  [UniProt]  [KEGG]conserved hypothetical protein
17Tgr7_18782002063..2002920 [+], 858219996357  [UniProt]  [KEGG]conserved hypothetical replication initiator and transcription repressor protein
18Tgr7_18792003174..2003812 [+], 639219996358  [UniProt]  [KEGG]Cobyrinic acid ac-diamide synthase
19Tgr7_18802003809..2004081 [+], 273219996359  [UniProt]  [KEGG]conserved hypothetical protein
20Tgr7_18812004078..2004611 [+], 534219996360  [UniProt]  [KEGG]transposon
21Tgr7_18822004608..2005207 [+], 600219996361  [UniProt]  [KEGG]TraF peptidase. Serine peptidase. MEROPS family S26C
22Tgr7_18832005518..2007629 [+], 2112219996362  [UniProt]  [KEGG]conserved hypothetical protein
23Tgr7_18842007655..2008389 [-], 735219996363  [UniProt]  [KEGG]response regulator receiver proteinVF
24Tgr7_18852008373..2011114 [-], 2742219996364  [UniProt]  [KEGG]sensor protein KdpD
25Tgr7_18862011207..2011662 [-], 456219996365  [UniProt]  [KEGG]PTS system, nitrogen regulatory IIA component
26Tgr7_18872011659..2012315 [-], 657219996366  [UniProt]  [KEGG]Potassium-transporting ATPase
27Tgr7_18882012326..2014365 [-], 2040219996367  [UniProt]  [KEGG]potassium-transporting ATPase subunit B
28Tgr7_18892014376..2016085 [-], 1710219996368  [UniProt]  [KEGG]Potassium-transporting ATPase
29Tgr7_18902016140..2016817 [-], 678219996369  [UniProt]  [KEGG]conserved hypothetical protein
30Tgr7_18912017350..2018294 [+], 945219996370  [UniProt]  [KEGG]transcriptional regulator, LysR family
31Tgr7_18922018291..2018569 [+], 279219996371  [UniProt]  [KEGG]putative lipoprotein
32Tgr7_18932018806..2020818 [+], 2013219996372  [UniProt]  [KEGG]TRAG family protein
33Tgr7_18942020815..2021279 [+], 465219996373  [UniProt]  [KEGG]CopG domain protein DNA-binding domain protein
34Tgr7_18952021276..2022346 [+], 1071219996374  [UniProt]  [KEGG]P-type conjugative transfer ATPase TrbB
35Tgr7_18962022343..2022735 [+], 393219996375  [UniProt]  [KEGG]Conjugal transfer protein TrbC
36Tgr7_18972022732..2023004 [+], 273219996376  [UniProt]  [KEGG]putative conjugal transfer TrbD transmembrane protein
37Tgr7_18982023017..2025470 [+], 2454219996377  [UniProt]  [KEGG]CagE TrbE VirB component of type IV transporter system
38Tgr7_18992025467..2026192 [+], 726219996378  [UniProt]  [KEGG]P-type conjugative transfer protein TrbJ
39Tgr7_19002026204..2026524 [+], 321219996379  [UniProt]  [KEGG]putative lipoprotein
40Tgr7_19012026521..2027903 [+], 1383219996380  [UniProt]  [KEGG]P-type conjugative transfer protein TrbL
41Tgr7_19022027916..2028620 [+], 705219996381  [UniProt]  [KEGG]Conjugal transfer protein
42Tgr7_19032028617..2029609 [+], 993219996382  [UniProt]  [KEGG]P-type conjugative transfer protein TrbG
43Tgr7_19042029612..2030886 [+], 1275219996383  [UniProt]  [KEGG]conjugation TrbI family protein
44Tgr7_19052030883..2031125 [+], 243219996384  [UniProt]  [KEGG]conserved hypothetical protein
45Tgr7_19062032038..2032595 [-], 558219996385 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
46Tgr7_19072032602..2034431 [-], 1830219996386 excinuclease ABC subunit C
47Tgr7_19082034451..2035107 [-], 657219996387 conserved hypothetical protein
48Tgr7_19092035170..2035832 [-], 663219996388 response regulator receiver protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins41Fasta
(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 9:242. [PudMed:19941653] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature