ICEberg
ICEberg ID335
NameICERsoGMI1000-1
FamilyTn4371
OrganismRalstonia solanacearum GMI1000
Size (bp)45922
GC content [Genome] (%)63.1 [67]
Insertion siteTTTTTTAT
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAL646052 (complete ICE sequence in this genome)
Replicon chromosome (3716413 bp, Project:13) [NC_003295]
Genome coordinates2780064..2825985
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of ICERsoGMI1000-1 form AL646052
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1RSc25662775576..2776091 [+], 51617429587 putative methylated-dna--protein-cysteine methyltransferase
2RSc25672776088..2776840 [+], 75317429588 conserved hypothetical protein
3alkB2776851..2777507 [+], 65717429589 probable alkylated dna repair protein
4alkA2777509..2778147 [+], 63917429590 probable dna-3-methyladenine glycosylase protein
5ada2778230..2779312 [+], 108317429591 probable ada regulatory of adaptative response contains: methylated-dna--protein-cysteine methyltransferase ec 2.1.1.63 o-6-methylguanine-dna transcription regulator
6RSc25712779312..2779581 [+], 27017429592 conserved hypothetical protein
7RSc25722779621..2780043 [+], 42317429593 probable lipoprotein
8tISRso152780153..2781373 [+], 122117429594  [UniProt]  [KEGG]isrso15-transposase protein
9RSc25742781673..2781915 [-], 24317429595  [UniProt]  [KEGG]conserved hypothetical protein
10trbI2781912..2783189 [-], 127817429596  [UniProt]  [KEGG]probable conjugal transfer trbi transmembrane protein
11trbG2783192..2784196 [-], 100517429597  [UniProt]  [KEGG]probable conjugal transfer lipoprotein trbg
12trbF2784193..2784897 [-], 70517429598  [UniProt]  [KEGG]probable conjugal transfer trbf transmembrane protein
13trbL2784928..2786301 [-], 137417429599  [UniProt]  [KEGG]putative conjugal transfer trbl transmembrane protein
14RSc25792786298..2786624 [-], 32717429600  [UniProt]  [KEGG]putative lipoprotein
15trbJ2786637..2787374 [-], 73817429601  [UniProt]  [KEGG]probable conjugal transfer trbj signal peptide protein
16trbE2787371..2789821 [-], 245117429602  [UniProt]  [KEGG]probable conjugal transfer protein trbe
17trbD2789834..2790106 [-], 27317429603  [UniProt]  [KEGG]probable conjugal transfer trbd transmembrane protein
18trbC2790103..2790495 [-], 39317429604  [UniProt]  [KEGG]probable conjugal transfer trbc transmembrane protein
19trbB2790492..2791559 [-], 106817429605  [UniProt]  [KEGG]probable conjugal transfer protein trbb
20RSc25852791556..2792032 [-], 47717429606  [UniProt]  [KEGG]hypothetical ribbon-helix-helix harboring protein
21traG2792029..2794056 [-], 202817429607  [UniProt]  [KEGG]probable plasmid conjugation trag transmembrane protein
22RSc25872794292..2794555 [-], 26417429608  [UniProt]  [KEGG]putative lipoprotein
23traR2794552..2795496 [-], 94517429609  [UniProt]  [KEGG]probable plasmid replication regulatory trar transcription regulator protein
24limA2795654..2796046 [-], 39317429610  [UniProt]  [KEGG]probable limonene-1,2-epoxide hydrolase protein
25limA22796232..2796618 [-], 38717429611  [UniProt]  [KEGG]putative limonene-1,2-epoxide hydrolase protein
26RSc25912796769..2797659 [+], 89117429612  [UniProt]  [KEGG]probable transcriptional regulator transcription regulator protein
27RSc25922797761..2798117 [+], 35717429613  [UniProt]  [KEGG]hypothetical protein of unknown function duf419
28RSc25932798145..2799572 [-], 142817429614  [UniProt]  [KEGG]putative carboxylesterase, type b; protein
29gstJ2799637..2800311 [-], 67517429615  [UniProt]  [KEGG]probable glutathione-s-transferase protein
30RSc25952800406..2800735 [-], 33017429616  [UniProt]  [KEGG]conserved hypothetical protein with dimeric alpha-beta barrel
31RSc25962800779..2801369 [-], 59117429617  [UniProt]  [KEGG]putative amidase related to nicotinamidase; protein
32RSc25972801443..2802201 [-], 75917429618  [UniProt]  [KEGG]putative short-chain dehydrogenase/reductase sdr; oxidoreductase protein
33RSc25982802374..2803273 [+], 90017429619  [UniProt]  [KEGG]probable transcription regulator protein
34RSc25992803326..2804081 [-], 75617429620  [UniProt]  [KEGG]hypothetical protein
35RSc26002804006..2804443 [+], 43817429621  [UniProt]  [KEGG]putative substrate-binding domain related to lysr regulator protein
36RSc26012804432..2806483 [-], 205217429622  [UniProt]  [KEGG]putative type iv secretory pathway vird2 (relaxase)-related protein
37traF2806866..2807465 [-], 60017429623  [UniProt]  [KEGG]probable conjugal transfer traf transmembrane protein
38RSc26032807462..2808007 [-], 54617429624  [UniProt]  [KEGG]conserved hypothetical protein
39RSc26042808004..2808288 [-], 28517429625  [UniProt]  [KEGG]hypothetical ribbon-helix-helix protein
40parA32808276..2808914 [-], 63917429626  [UniProt]  [KEGG]putative partition protein
41RSc26062809180..2810025 [-], 84617429628  [UniProt]  [KEGG]probable replication initiation repa-like protein
42RSc26072810052..2810327 [-], 27617429629  [UniProt]  [KEGG]putative dna binding protein
43RSc26082810442..2811212 [-], 77117429630  [UniProt]  [KEGG]putative aspartate decarboxylase-like fold harboring protein
44RSc26092811557..2812150 [-], 59417429631  [UniProt]  [KEGG]probable lipoprotein
45RSc26102812223..2812513 [+], 29117429632  [UniProt]  [KEGG]putative transcription regulator protein
46RSc26112812522..2813085 [+], 56417429633  [UniProt]  [KEGG]hypothetical tir protein
47RSc26122813107..2813955 [+], 84917429634  [UniProt]  [KEGG]hypothetical transmembrane protein
48RSc26132814305..2814619 [-], 31517429635  [UniProt]  [KEGG]hypothetical protein of unknown function duf736
49RSc26142815483..2816184 [-], 70217429636  [UniProt]  [KEGG]conserved hypothetical protein
50RSc26152816196..2816681 [-], 48617429637  [UniProt]  [KEGG]conserved hypothetical protein
51RSc26162816842..2817048 [-], 20717429638  [UniProt]  [KEGG]conserved hypothetical protein
52RSc26172817109..2818902 [-], 179417429639  [UniProt]  [KEGG]conserved hypothetical protein
53RSc26182818983..2819813 [-], 83117429640  [UniProt]  [KEGG]putative f plasmid gene 32-like proteinVF
54RSc26192820359..2822662 [+], 230417429641  [UniProt]  [KEGG]conserved hypothetical protein
55radC22822729..2823238 [-], 51017429642  [UniProt]  [KEGG]probable dna repair radc-like proteinVF
56RSc26212823536..2824603 [-], 106817429643  [UniProt]  [KEGG]hypothetical protein of unknown function duf1016
57int2824600..2825802 [-], 120317429644  [UniProt]  [KEGG]integrase-tyrosine recombinase protein
58purM2826032..2827093 [-], 106217429645 probable phosphoribosylformylglycinamidine cyclo-ligase (airs)(phosphoribosyl-aminoimidazole synthetase) (air synthase) protein
59RSc26242827245..2828315 [+], 107117429646 probable permease transmembrane transport protein
60RSc26252828338..2829039 [+], 70217429647 putative cog0593, atpase involved in dna replication initiation protein
61RSc26262829146..2829820 [+], 67517429648 probable had-superfamily subfamily ib, pspase-like; protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins50Fasta
(1) Salanoubat M; Genin S; Artiguenave F; Gouzy J; Mangenot S; Arlat M; Billault A; Brottier P; Camus JC; Cattolico L; Chandler M; Choisne N; Claudel-Renard C; Cunnac S; Demange N; Gaspin C; Lavie M; Moisan A; Robert C; Saurin W; Schiex T; Siguier P; Thebault P; Whalen M; Wincker P; Levy M; Weissenbach J; Boucher CA (2002). Genome sequence of the plant pathogen Ralstonia solanacearum. Nature. 415(6871):497-502. [PudMed:11823852]