ICEberg
ICEberg ID336
NameICEAviDJ-1
FamilyTn4371
OrganismAzotobacter vinelandii DJ
Size (bp)48653
GC content [Genome] (%)65.1 [65]
Insertion siteTTTTTTGT
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP001157 (complete ICE sequence in this genome)
Replicon chromosome (5365318 bp, Project:16) [NC_012560]
Genome coordinates3632448..3681100
Link to view genome context of this ICE in the genome browser
in_silico This is a putative ICE identified in this study by Blast.
Complete gene list of ICEAviDJ-1 form CP001157
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1Avin_355403628485..3628931 [+], 447226720532 Iron-sulfur binding oxidoreductase
2Avin_355503628936..3631176 [+], 2241226720533 Oxidoreductase, xanthine dehydrogensae-like protein
3Avin_355603631223..3631330 [+], 108226720534 hypothetical protein
4Avin_355703631382..3631699 [+], 318226720535 conserved hypothetical protein
5Avin_355803631903..3632400 [-], 498226720536 conserved hypothetical protein
6Avin_355903632844..3633860 [-], 1017226720537  [UniProt]  [KEGG]Transposase IS116/IS110/IS902VF
7Avin_356003633976..3634293 [+], 318226720538  [UniProt]  [KEGG]transposase
8Avin_356203634554..3634799 [-], 246226720539  [UniProt]  [KEGG]conserved hypothetical protein
9trbG3636078..3636974 [-], 897226720540  [UniProt]  [KEGG]P-type conjugative transfer protein TrbG
10trbF3637076..3637780 [-], 705226720541  [UniProt]  [KEGG]Conjugal transfer protein TrbF
11trbL3637811..3639184 [-], 1374226720542  [UniProt]  [KEGG]P-type conjugative transfer protein TrbL
12Avin_356703639181..3639483 [-], 303226720543  [UniProt]  [KEGG]lipoprotein
13trbJ3639496..3640233 [-], 738226720544  [UniProt]  [KEGG]P-type conjugative transfer protein TrbJ
14trbE3640230..3642680 [-], 2451226720545  [UniProt]  [KEGG]P-type conjugative transfer protein TrbE
15trbD3642693..3642977 [-], 285226720546  [UniProt]  [KEGG]P-type conjugative transfer protein TrbD
16trbC3642974..3643258 [-], 285226720547  [UniProt]  [KEGG]P-type conjugative transfer protein TrbC
17trbB3643354..3644406 [-], 1053226720548  [UniProt]  [KEGG]P-type conjugative transfer ATPase TrbB
18Avin_357303644403..3644867 [-], 465226720549  [UniProt]  [KEGG]conserved hypothetical protein
19Avin_357403644864..3646864 [-], 2001226720550  [UniProt]  [KEGG]TRAG family bacterial conjugation protein
20Avin_357503647100..3647366 [-], 267226720551  [UniProt]  [KEGG]lipoprotein
21Avin_357603647363..3648307 [-], 945226720552  [UniProt]  [KEGG]Bacterial regulatory protein, LysR family
22Avin_357703648318..3649796 [-], 1479226720553  [UniProt]  [KEGG]Major Facilitator Superfamily transporter
23Avin_357803649892..3650509 [+], 618226720554  [UniProt]  [KEGG]Bacterial regulatory protein, TetR
24Avin_357903650610..3651641 [-], 1032226720555  [UniProt]  [KEGG]conserved hypothetical protein
25Avin_358003651699..3652562 [-], 864226720556  [UniProt]  [KEGG]Conserved hypothetical protein
26Avin_358103652713..3653264 [+], 552226720557  [UniProt]  [KEGG]Regulatory protein, TetR-family
27Avin_358203653311..3654111 [-], 801226720558  [UniProt]  [KEGG]Oxidoreductase
28Avin_358303654196..3655092 [+], 897226720559  [UniProt]  [KEGG]Regulatory protein, LysR-familyVF
29Avin_358403655160..3655423 [-], 264226720560  [UniProt]  [KEGG]lipoprotein
30Avin_358503655420..3656364 [-], 945226720561  [UniProt]  [KEGG]Regulatory protein, LysR-family
31Avin_358603656368..3657576 [-], 1209226720562  [UniProt]  [KEGG]Major facilitator superfamily transporter
32Avin_358703657573..3658799 [-], 1227226720563  [UniProt]  [KEGG]major facilitator family transporter
33Avin_358803658820..3660010 [-], 1191226720564  [UniProt]  [KEGG]Beta-lactamase-like protein
34Avin_358903660127..3661056 [+], 930226720565  [UniProt]  [KEGG]Regulatory protein, LysR family
35Avin_359003661086..3662264 [-], 1179226720566  [UniProt]  [KEGG]chloramphenicol resistance protein
36Avin_359103662245..3662331 [+], 87226720567  [UniProt]  [KEGG]hypothetical protein
37Avin_359203662423..3663337 [+], 915226720568  [UniProt]  [KEGG]Regulatory protein, LysR family
38Avin_359303663354..3665339 [-], 1986226720569  [UniProt]  [KEGG]conserved hypothetical protein
39traF3665788..3666312 [-], 525226720570  [UniProt]  [KEGG]conjugative transfer signal peptidase TraF
40Avin_359503666384..3666842 [-], 459226720571  [UniProt]  [KEGG]conserved hypothetical protein
41Avin_359603666926..3667180 [-], 255226720572  [UniProt]  [KEGG]conserved hypothetical protein
42Avin_359703667177..3667815 [-], 639226720573  [UniProt]  [KEGG]ATPase, ParA type
43Avin_359803668057..3668944 [-], 888226720574  [UniProt]  [KEGG]conserved hypothetical replication initiator and transcription repressor protein
44Avin_359903668941..3669210 [-], 270226720575  [UniProt]  [KEGG]conserved hypothetical protein
45Avin_360003669337..3670119 [-], 783226720576  [UniProt]  [KEGG]conserved hypothetical protein
46Avin_360103670458..3670814 [-], 357226720577  [UniProt]  [KEGG]lipoprotein
47Avin_360203671148..3671384 [+], 237226720578  [UniProt]  [KEGG]Transcriptional regulator Cro/CI-like protein
48Avin_360303671427..3671564 [-], 138226720579  [UniProt]  [KEGG]conserved hypothetical protein
49Avin_360403671645..3672151 [-], 507226720580  [UniProt]  [KEGG]DNA repair protein RadC-like proteinVF
50Avin_360503672551..3674056 [-], 1506226720581  [UniProt]  [KEGG]C-5 cytosine-specific DNA methylaseVF
51Avin_360603674155..3674235 [+], 81226720582  [UniProt]  [KEGG]hypothetical protein
52Avin_360703674474..3675817 [-], 1344226720583  [UniProt]  [KEGG]hypothetical protein
53Avin_360803675814..3677985 [-], 2172226720584  [UniProt]  [KEGG]ATP binding/ATPase (HATPase_c) domain-containing protein
54Avin_360903677985..3678230 [-], 246226720585  [UniProt]  [KEGG]conserved hypothetical protein
55Avin_361003678902..3679222 [-], 321226720586  [UniProt]  [KEGG]transcriptional regulator
56Avin_361103679219..3679554 [-], 336226720587  [UniProt]  [KEGG]conserved hypothetical protein
57Avin_361203679716..3680918 [-], 1203226720588  [UniProt]  [KEGG]Phage integrase
58Avin_361303681193..3681702 [+], 510226720589 transposase of insertion sequence ISRm10-1, orfB C-terminus protein
59Avin_361403681873..3683078 [-], 1206226720590 FOG transposase
60Avin_361503683176..3684594 [-], 1419226720591 Bacterial regulatory protein, GntR
61Avin_361603684651..3684905 [-], 255226720592 transposase IS4 family
62Avin_361643685001..3685408 [-], 408226720593 transposase protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins52Fasta
Identified as part of this study from CP001157