ICEberg ID337
OrganismCupriavidus metallidurans CH34
Size (bp)101638
GC content [Genome] (%)63.2 [64]
Insertion siteTTTTTGTTT
Species that ICE can be transferred to-
Nucleotide SequenceCP000352 (complete ICE sequence in this genome)
Replicon chromosome 1 (3928089 bp, Project:250) [NC_007973]
Genome coordinates1359263..1460900
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of CMGI-2 form CP000352
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1Rmet_12331355701..1356477 [+], 77793354030 hypothetical protein
2Rmet_12341356502..1356738 [+], 23793354031 conserved hypothetical protein DUF465
3yoaA1356779..1359010 [+], 223293354032 putative ATP-dependent helicase
4int1359445..1360644 [+], 120093354033  [UniProt]  [KEGG]tyrosine-based site-specific recombinase CMGI-2
5Rmet_12371360641..1361717 [+], 107793354034  [UniProt]  [KEGG]conserved hypothetical protein (secreted)
6radC'1362069..1362485 [+], 417pseudogene -
7ritA21362583..1363842 [+], 126093354036  [UniProt]  [KEGG]tyrosine-based site-specific recombinase
8ritB21363839..1364831 [+], 99393354037  [UniProt]  [KEGG]tyrosine-based site-specific recombinase
9ritC21364828..1365838 [+], 101193354038  [UniProt]  [KEGG]tyrosine-based site-specific recombinase , N-terminal SAM-like protein
10radC'1366076..1366186 [+], 111pseudogene -
11Rmet_12431366465..1366857 [+], 39393354040  [UniProt]  [KEGG]conserved hypothetical protein
12yupB1367383..1368390 [+], 100893354041  [UniProt]  [KEGG]F plasmid protein 32-like protein (CMGI-2)VF
13parB1368469..1370520 [+], 205293354042  [UniProt]  [KEGG]nuclease ParB (CMGI-2)
14Rmet_12461370728..1371246 [-], 51993354043  [UniProt]  [KEGG]GCN5-related N-acetyltransferase, GNAT family
15Rmet_12471371398..1371727 [+], 330pseudogene -
16Rmet_64451371609..1371872 [-], 264288227158  [UniProt] hypothetical protein
17Rmet_12481372035..1372388 [+], 35493354044  [UniProt]  [KEGG]conserved hypothetical protein
18Rmet_12491372453..1372758 [-], 30693354045  [UniProt]  [KEGG]transcription regulator (helix turn helix motif) XRE family
19Rmet_12501372771..1373352 [+], 58293354046  [UniProt]  [KEGG]putative lipoprotein
20tnp1373579..1374580 [-], 100293354047  [UniProt]  [KEGG]transposase ISRme5 (copy a, CMGI-2)
21Rmet_12521374596..1375468 [+], 87393354048  [UniProt]  [KEGG]conserved hypothetical protein
22Rmet_12531375516..1375833 [+], 31893354049  [UniProt]  [KEGG]Putative dna binding protein
23repA1375860..1376717 [+], 85893354050  [UniProt]  [KEGG]replication initiator and transcription repressor protein
24parA1376971..1377609 [+], 63993354051  [UniProt]  [KEGG]ATPase involved in plasmid partitioning
25parG1377606..1377878 [+], 27393354052  [UniProt]  [KEGG]regulator of plasmid copy number
26Rmet_12571377875..1378408 [+], 53493354053  [UniProt]  [KEGG]conserved hypothetical protein; putative exported protein
27traF1378405..1378992 [+], 58893354054  [UniProt]  [KEGG]plasmid conjugal transfer transmembrane protein
28virD21379309..1381414 [+], 210693354055  [UniProt]  [KEGG]Relaxase type IV secretory pathway VirD2(protein belongs to CMGI-2)
29Rmet_12601381452..1381913 [-], 46293354056  [UniProt]  [KEGG]conserved hypothetical protein; putative exported protein
30Rmet_12611381974..1383101 [-], 112893354057  [UniProt]  [KEGG]putative secreted protein (protein belongs to CMGI-2)
31tnpA1383234..1384484 [-], 125193354058  [UniProt]  [KEGG]transposase IS1090
32tnpB1384634..1385440 [-], 80793354059  [UniProt]  [KEGG]IstB-like ATP binding protein ISRme20VF
33tnpA1385440..1386450 [-], 101193354060  [UniProt]  [KEGG]transposase (DDE site) ISRme20VF
34Rmet_12651386618..1387484 [-], 86793354061  [UniProt]  [KEGG]conserved hypothetical protein
35Rmet_12661387484..1388893 [-], 141093354062  [UniProt]  [KEGG]putative RNA Modifying Enzyme
36Rmet_64461388901..1389104 [-], 204288227159  [UniProt] conserved hypothetical protein
37oprN1389124..1390662 [-], 153993354063  [UniProt]  [KEGG]Outer membrane efflux family protein precursor
38ybhR1390659..1391777 [-], 111993354064  [UniProt]  [KEGG]permease component of ABC superfamily (CMGI-2)
39ybhS1391782..1392951 [-], 117093354065  [UniProt]  [KEGG]putative transporter subunit: permease component of ABC superfamily
40Rmet_12701393084..1393290 [-], 207pseudogene -
41ritA11393469..1394701 [+], 123393354067  [UniProt]  [KEGG]tyrosine-based site-specific recombinase (recombinase triad in CMGI-2)
42ritB11394698..1395645 [+], 94893354068  [UniProt]  [KEGG]tyrosine based site-specific recombinase
43ritC11395642..1396637 [+], 99693354069  [UniProt]  [KEGG]tyrosine-based site-specific recombinase
44tnpA1396731..1398221 [-], 1491pseudogene -
45Rmet_12751398244..1398603 [-], 36093354071  [UniProt]  [KEGG]conserved hypothetical protein
46Rmet_12761398603..1398938 [-], 33693354072  [UniProt]  [KEGG]conserved hypothetical protein
47Rmet_12771398971..1399222 [-], 25293354073  [UniProt]  [KEGG]putative transporter fused subunits of ABC superfamily: ATP-binding components (fragment)
48Rmet_12781399238..1399627 [+], 390pseudogene -
49Rmet_12791399619..1399882 [-], 264pseudogene -
50tnpA1400002..1401393 [+], 139293354076  [UniProt]  [KEGG]transposase ISRme5 (copy b, CMGI-2)
51hypE11401177..1402289 [-], 111393354077  [UniProt]  [KEGG]carbamoyl phosphate phosphatase, hydrogenase 3 maturation protein (CMGI-2)
52hypD11402286..1403449 [-], 116493354078  [UniProt]  [KEGG]protein required for maturation of hydrogenases (CMGI-2)
53hypC11403458..1403685 [-], 22893354079  [UniProt]  [KEGG]HypC1 hydrogenase 2 accessory protein (CMGI-2)
54hypF11403676..1404815 [-], 114093354080  [UniProt]  [KEGG]HypF1 hydrogenase maturation protein (CMGI-2)
55hypB11404829..1405866 [-], 103893354081  [UniProt]  [KEGG]HypB1 GTP hydrolase involved in nickel liganding into hydrogenases (CMGI-2)
56hypA11405890..1406237 [-], 34893354082  [UniProt]  [KEGG]HypA1 Hydrogenase nickel incorporation protein hypA (CMGI-2)
57hoxV1406230..1407384 [-], 115593354083  [UniProt]  [KEGG]HoxV Hydrogenase expression/formation protein hoxV (CMGI-2)
58hoxT1407413..1407889 [-], 47793354084  [UniProt]  [KEGG]HoxT putative hydrogenase expression/formation protein (CMGI-2)
59hoxR1407891..1408121 [-], 23193354085  [UniProt]  [KEGG]HoxR Rubredoxin (Rd)Electron transport; (belongs to CMGI-2)
60hoxQ1408127..1408990 [-], 86493354086  [UniProt]  [KEGG]HoxQ protein involved in nickel incorporation into hydrogenase-1 proteins(belongs to CMGI-2)
61hoxO1409022..1409471 [-], 45093354087  [UniProt]  [KEGG]HoxO Hydrogenase expression/formation protein hoxO (belongs to CMGI-2)
62hoxL1409487..1409789 [-], 30393354088  [UniProt]  [KEGG]HoxL hydrogenase expression/formation protein hoxL (belongs to CMGI-2)
63hoxM1409791..1410456 [-], 66693354089  [UniProt]  [KEGG]HoxM protein involved in processing of HyaA and HyaB proteins Hydrolase; Nickel Metalloprotease; (belongs to CMGI-2)Protease Absolutely required for hydrogenase activity
64Rmet_12941410478..1410861 [-], 38493354090  [UniProt]  [KEGG]putative plasmid maintenance system antidote protein, XRE family Putative HTH-type transcriptional regulator ybaQ (belongs to CMGI-2)
65hoxZ1410945..1411676 [-], 73293354091  [UniProt]  [KEGG]hoxZ Probable membrane-bound Ni/Fe-hydrogenase-linked b-type cytochrome (belongs to CMGI-2)
66hupE1411714..1412451 [-], 73893354092  [UniProt]  [KEGG]HupE putative membrane-bound hydrogenase component hupE HupE/UreJ protein precursor (modular protein)Uptake hydrogenase (belongs to CMGI-2)
67hoxG1412448..1414307 [-], 186093354093  [UniProt]  [KEGG]HoxG hydrogenase 1, large subunit Uptake hydrogenase large subunit (Hydrogenlyase) (Membrane-bound hydrogenase large subunit) (belongs to CMGI-2)
68hoxK1414328..1415422 [-], 109593354094  [UniProt]  [KEGG]HoxK membrane-bound (NiFe) hydrogenase small subunit (belongs to CMGI-2)
69Rmet_12991415555..1415956 [+], 40293354095  [UniProt]  [KEGG]hypothetical protein (belongs to CMGI-2)
70Rmet_13001415972..1416667 [-], 69693354096  [UniProt]  [KEGG]choline dehydrogenase (CDH) (partial)(belongs to CMGI-2)
71tnpA1416784..1417749 [+], 96693354097  [UniProt]  [KEGG]transposase ISRme5 (copy c)
72tnpB1417721..1418242 [-], 522pseudogene -
73tnpA1418275..1418538 [-], 26493354099  [UniProt]  [KEGG]IS3/IS407-type transposase (orfA)(belongs to CMGI-2) DNA-binding protein second orf of element are fragments Rmet_1302 and Rmet_1279
74Rmet_13041418613..1419044 [+], 432pseudogene -
75patR1419138..1420982 [-], 184593354101  [UniProt]  [KEGG]transcriptional regulatory protein with helix-turn-helix motif, Fis-type (belongs to CMGI-2)VF
76Rmet_13061421155..1421985 [-], 83193354102  [UniProt]  [KEGG]2-hydroxymuconic semialdehyde hydrolase (HMSH) - alpha/beta hydrolase superfamily (belongs to CMGI-2)
77Rmet_64471422085..1422249 [-], 165288227160  [UniProt] conserved hypothetical protein (partial)(belongs to CMGI-2)
78Rmet_13071422721..1424115 [-], 139593354103  [UniProt]  [KEGG]membrane protein precursor involved in aromatic hydrocarbon degradation (TbuX/FadL-like)(belongs to CMGI-2)
79Rmet_13081424194..1425255 [-], 106293354104  [UniProt]  [KEGG]Alcohol dehydrogenase GroES-like protein (belongs to CMGI-2)
80tnpA1425425..1425835 [+], 411288227161  [UniProt] transposase (orfA) ISRme6
81Rmet_64481425898..1426242 [+], 345288227162  [UniProt] putative transposase (orfB) ISRme6
82Rmet_13101426313..1426765 [-], 453pseudogene -
83Rmet_13111426985..1428007 [-], 102393354105  [UniProt]  [KEGG]ferredoxin--NAD(+) reductase (FAD/NAD(P)-binding region)(belongs to CMGI-2)
84tmoE1428107..1429093 [-], 98793354106  [UniProt]  [KEGG]Toluene-4-monooxygenase system protein E (belongs to CMGI-2)
85tmoD1429148..1429462 [-], 31593354107  [UniProt]  [KEGG]Toluene-4-monooxygenase system protein D
86tmoC1429503..1429838 [-], 33693354108  [UniProt]  [KEGG]Toluene-4-monooxygenase system protein C (belongs to CMGI-2)
87tmoB1429894..1430160 [-], 26793354109  [UniProt]  [KEGG]Toluene-4-monooxygenase system protein B (belongs to CMGI-2)
88tmoA1430229..1431731 [-], 150393354110  [UniProt]  [KEGG]Toluene-4-monooxygenase system protein A (belongs to CMGI-2)
89nahJ1431791..1431982 [-], 19293354111  [UniProt]  [KEGG]4-oxalocrotonate tautomerase family enzyme (protein belongs to CMGI-2)
90dmpH1431994..1432782 [-], 78993354112  [UniProt]  [KEGG]4-oxalocrotonate decarboxylase (protein belongs to CMGI-2)
91bphI1432779..1433825 [-], 104793354113  [UniProt]  [KEGG]4-hydroxy-2-oxovalerate/4-hydroxy-2- oxopentanoic acid aldolase, class I 4-Hydroxy-2-oxovalerate aldolase (protein belongs to CMGI-2)
92mhpF1433845..1434756 [-], 91293354114  [UniProt]  [KEGG]Acetaldehyde-CoA dehydrogenase II, NAD-binding (protein belongs to CMGI-2)
93xylJ1434835..1435623 [-], 78993354115  [UniProt]  [KEGG]2-hydroxypent-2,4-dienoate hydratase (protein belongs to CMGI-2)
94dmpC1435620..1437131 [-], 151293354116  [UniProt]  [KEGG]2-hydroxymuconic semialdehyde dehydrogenase (HMSD)(protein belongs to CMGI-2)
95Rmet_13231437198..1437647 [-], 45093354117  [UniProt]  [KEGG]Hypothetical protein
96dmpB1437669..1438613 [-], 94593354118  [UniProt]  [KEGG]Metapyrocatechase (MPC) (CatO2ase) (Catechol 2,3- dioxygenase) (C23O) (protein belongs to CMGI-2)
97Rmet_13251438631..1438987 [-], 35793354119  [UniProt]  [KEGG]Ferredoxin (protein belongs to CMGI-2)
98tomA51438990..1440054 [-], 106593354120  [UniProt]  [KEGG]Phenol hydroxylase P5 protein (Phenol 2-monooxygenase P5 component) (protein belongs to CMGI-2)
99tomA41440133..1440489 [-], 35793354121  [UniProt]  [KEGG]toluene ortho-monooxygenase P4 protein (toluene ortho-monooxygenase P4 component) (protein belongs to CMGI-2)
100tomA31440486..1442045 [-], 156093354122  [UniProt]  [KEGG]toluene hydroxylase P3 protein (toluene 2-monooxygenase P3 component) (protein belongs to CMGI-2)
101tomA21442068..1442337 [-], 27093354123  [UniProt]  [KEGG]phenol hydroxylase P2 protein (phenol 2-monooxygenase P2 component) (protein belongs to CMGI-2)
102tomA11442377..1443372 [-], 99693354124  [UniProt]  [KEGG]Phenol hydroxylase P1 protein (Phenol 2-monooxygenase P1 component)(protein belongs to CMGI-2)
103tomA01443460..1443684 [-], 22593354125  [UniProt]  [KEGG]TomA0 (protein belongs to CMGI-2)
104Rmet_13321444219..1444560 [+], 342pseudogene -
105phaB21444571..1445317 [+], 74793354127  [UniProt]  [KEGG]3-oxoacyl-(acyl-carrier-protein) reductase (protein belongs to CMGI-2)
106uspA21445377..1445841 [+], 46593354128  [UniProt]  [KEGG]universal stress protein, UspA family (protein belongs to CMGI-2)
107chnA1446018..1446806 [+], 78993354129  [UniProt]  [KEGG]Cyclohexanol dehydrogenase (protein belongs to CMGI-2)
108traR1446803..1447765 [+], 96393354130  [UniProt]  [KEGG]Transcriptional regulator, LysR family (CMGI-2)VF
109Rmet_13371447762..1448040 [+], 27993354131  [UniProt]  [KEGG]lipoprotein precursor (transfer module CMGI-2)
110Rmet_13381447986..1448282 [-], 29793354132  [UniProt]  [KEGG]hypothetical protein
111traG1448292..1450286 [+], 199593354133  [UniProt]  [KEGG]Conjugal transfer protein TraG (CMGI-2)
112Rmet_13401450283..1450747 [+], 46593354134  [UniProt]  [KEGG]DNA-binding helix-turn-helix domain-containing protein (CopG-like) (CMGI-2)
113trbB1450744..1451808 [+], 106593354135  [UniProt]  [KEGG]P-type conjugative transfer ATPase TrbB (CMGI-2)
114trbC1451805..1452188 [+], 38493354136  [UniProt]  [KEGG]conjugal transfer TrbC transmembrane protein (CMGI-2)
115trbD1452185..1452457 [+], 27393354137  [UniProt]  [KEGG]conjugal transfer TrbD transmembrane protein (protein belongs to CMGI-2)
116trbE1452470..1454929 [+], 246093354138  [UniProt]  [KEGG]ATPase involved in conjugal transfer CagE TrbE VirB component of type IV transporter system (protein belongs to CMGI-2)
117trbJ1454926..1455663 [+], 73893354139  [UniProt]  [KEGG]conjugal transfer TrbJ signal peptide protein (protein belongs to CMGI-2)
118Rmet_13461455676..1455996 [+], 32193354140  [UniProt]  [KEGG]lipoprotein (protein belongs to CMGI-2)
119trbL1455993..1457372 [+], 138093354141  [UniProt]  [KEGG]conjugal transfer trbL transmembrane protein (protein belongs to CMGI-2)
120trbF1457397..1458101 [+], 70593354142  [UniProt]  [KEGG]conjugal transfer trbF precursor (protein belongs to CMGI-2)
121trbG1458098..1459090 [+], 99393354143  [UniProt]  [KEGG]Conjugal transfer protein TrbG/VirB9/CagX precursor putative exported protein(protein belongs to CMGI-2)
122trbI1459093..1460364 [+], 127293354144  [UniProt]  [KEGG]type IV secretion system transmembrane protein (conjugal transfer:mating pair formation ) (protein belongs to CMGI-2)
123Rmet_13511460361..1460606 [+], 24693354145  [UniProt]  [KEGG]conserved hypothetical protein CMGI-2
124comL1460941..1461777 [-], 83793354146 DNA uptake lipoprotein
125rluD1461789..1463000 [+], 121293354147 23S rRNA pseudouridine synthase
126Rmet_13541462987..1463778 [+], 79293354148 conserved hypothetical protein
127Rmet_13551463804..1464031 [-], 22893354149 putative transmembrane protein
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
(1) Janssen PJ; Van Houdt R; Moors H; Monsieurs P; Morin N; Michaux A; Benotmane MA; Leys N; Vallaeys T; Lapidus A; Monchy S; Medigue C; Taghavi S; McCorkle S; Dunn J; van der Lelie D; Mergeay M (2010). The complete genome sequence of Cupriavidus metallidurans strain CH34, a master survivalist in harsh and anthropogenic environments. PLoS One. 5(5):e10433. [PudMed:20463976]