ICEberg
ICEberg ID338
NameCMGI-3
FamilyTn4371
OrganismCupriavidus metallidurans CH34
Size (bp)97043
GC content [Genome] (%)64 [64]
Insertion siteGTAAAA
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP000352 (complete ICE sequence in this genome)
Replicon chromosome 1 (3928089 bp, Project:250) [NC_007973]
Genome coordinates1585489..1682531
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of CMGI-3 form CP000352
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1guaB1581506..1582969 [+], 146493354255 inosine-5'-monophosphate dehydrogenase
2Rmet_14621583057..1583698 [+], 64293354256 putative membrane protein
3guaA1583673..1585292 [+], 162093354257 GMP synthetase (glutamine aminotransferase)
4int1585594..1586850 [+], 125793354259  [UniProt]  [KEGG]tyrosine-based site-specific recombinase
5Rmet_14661587051..1587326 [+], 27693354260  [UniProt]  [KEGG]conserved hypothetical protein
6Rmet_14671587331..1587855 [+], 52593354261  [UniProt]  [KEGG]conserved hypothetical protein
7Rmet_14681587871..1588281 [-], 41193354262  [UniProt]  [KEGG]Phage-related protein (modular protein)
8Rmet_14691588375..1589124 [-], 75093354263  [UniProt]  [KEGG]TatD-related deoxyribonuclease
9Rmet_14701589138..1590505 [-], 136893354264  [UniProt]  [KEGG]conserved hypothetical protein
10Rmet_14711590502..1591383 [-], 88293354265  [UniProt]  [KEGG]conserved hypothetical protein
11Rmet_14721591383..1593317 [-], 193593354266  [UniProt]  [KEGG]KAP P-loop
12Rmet_14731593336..1594307 [-], 97293354267  [UniProt]  [KEGG]putative RNA-directed DNA polymerase (Reverse transcriptase)
13Rmet_64501594273..1594578 [-], 306288227164  [UniProt] putative transcriptional regulator (helix-turn-helix motif, XRE-like)
14Rmet_14741594631..1594870 [-], 24093354268  [UniProt]  [KEGG]hypothetical protein
15Rmet_14751595652..1596002 [+], 35193354269  [UniProt]  [KEGG]lipoprotein
16Rmet_14761596102..1596440 [-], 33993354270  [UniProt]  [KEGG]hypothetical protein
17yupB1596748..1597578 [+], 83193354271  [UniProt]  [KEGG]F plasmid protein 32-like protein (protein belongs to CMGI-3)VF
18parB1597643..1599685 [+], 204393354272  [UniProt]  [KEGG]ParB nuclease
19Rmet_14791599888..1600910 [-], 102393354273  [UniProt]  [KEGG]conserved hypothetical protein
20Rmet_14801601776..1602090 [+], 31593354274  [UniProt]  [KEGG]conserved hypothetical protein
21ydcN1602448..1602741 [-], 29493354275  [UniProt]  [KEGG]putative DNA-binding transcriptional regulator
22Rmet_14821602957..1603304 [+], 34893354276  [UniProt]  [KEGG]lipoprotein
23Rmet_14831603648..1604439 [+], 79293354277  [UniProt]  [KEGG]conserved hypothetical protein
24Rmet_14841604478..1604804 [+], 32793354278  [UniProt]  [KEGG]putative transcriptional regulator (DNA binding protein)
25repA1604819..1605688 [+], 87093354279  [UniProt]  [KEGG]replication initiation protein CMGI-3 (GI family Tn4371)
26parA1605942..1606580 [+], 63993354280  [UniProt]  [KEGG]ATPase involved in plasmid partitioning ParA
27parG1606577..1606861 [+], 285288227165  [UniProt] regulator of plasmid copy number (ribbon-helix-helix)
28Rmet_14871606858..1607400 [+], 543288227166  [UniProt]  [KEGG]conserved hypothetical protein
29traF1607397..1607984 [+], 58893354282  [UniProt]  [KEGG]plasmid conjugal transfer transmembrane protein
30virD21608307..1610409 [+], 210393354283  [UniProt]  [KEGG]Relaxase type IV secretory pathway VirD2
31Rmet_14901610418..1611011 [-], 59493354284  [UniProt]  [KEGG]putative transcriptional regulator (fragment)VF
32tnpA1611195..1614110 [+], 291693354285  [UniProt]  [KEGG]transposase IS1071
33cbbA11614223..1615083 [-], 86193354286  [UniProt]  [KEGG]Fructose-bisphosphate aldolase 1 (Fba)
34Rmet_14931615177..1615350 [-], 174pseudogene -
35cbbY (delta)1615529..1615732 [-], 204pseudogene -
36cbbY (delta)1615745..1615948 [-], 204pseudogene -
37Rmet_14961615994..1616368 [-], 37593354290  [UniProt]  [KEGG]hypothetical protein
38Rmet_14971616384..1616680 [-], 29793354291  [UniProt]  [KEGG]conserved hypothetical protein
39cbbO1616689..1619046 [-], 235893354292  [UniProt]  [KEGG]Rubisco activation protein
40cbbQ1619059..1619862 [-], 80493354293  [UniProt]  [KEGG]Rubisco activation protein
41cbbS1620012..1620368 [-], 35793354294  [UniProt]  [KEGG]ribulose 1,5-bisphosphate carboxylase/oxygenase, RuBisCO (type I) small subunit (CbbS)
42cbbL1620446..1621867 [-], 142293354295  [UniProt]  [KEGG]ribulose 1,5-bisphosphate carboxylase/oxygenase, RuBisCo (type I) large subunit (CbbL)
43cbbR11621992..1622873 [+], 88293354296  [UniProt]  [KEGG]RuBisCO operon transcriptional regulator
44Rmet_64521622912..1623031 [+], 120288227167  [UniProt] hypothetical protein
45tnpA1623052..1624302 [+], 125193354297  [UniProt]  [KEGG]transposase IS1090
46Rmet_15041624306..1624614 [-], 309pseudogene -
47Rmet_15051624713..1625294 [-], 582pseudogene -
48tnpA1625591..1628506 [-], 291693354300  [UniProt]  [KEGG]transposase IS1071
49cbbF11628605..1629444 [-], 84093354301  [UniProt]  [KEGG]fructose-1,6-bisphosphatase
50Rmet_64531629650..1629802 [-], 153288227168  [UniProt] hypothetical protein
51cbbR21629952..1630875 [-], 92493354302  [UniProt]  [KEGG]LysR-type transcriptional regulator (RuBisCO operon transcriptional regulator)
52cbbS(delta)1630981..1631145 [+], 165pseudogene -
53cbbE11631163..1631861 [+], 69993354304  [UniProt]  [KEGG]D-ribulose-5-phosphate 3-epimerase
54cbbF21632041..1633138 [+], 109893354305  [UniProt]  [KEGG]fructose-1,6-bisphosphatase I
55cbbP1633171..1634055 [+], 88593354306  [UniProt]  [KEGG]phosphoribulokinase
56cbbT11634055..1636109 [+], 205593354307  [UniProt]  [KEGG]transketolase 1, thiamin-binding protein
57cbbZ11636111..1636842 [+], 73293354308  [UniProt]  [KEGG]phosphoglycolate phosphatase (PGP)
58cbbG11636839..1637846 [+], 100893354309  [UniProt]  [KEGG]glyceraldehyde-3-phosphate dehydrogenase A (GAPDH-A)
59pgk11637843..1639033 [+], 119193354310  [UniProt]  [KEGG]phosphoglycerate kinase (Pgk)
60cbbY1639030..1639848 [+], 81993354311  [UniProt]  [KEGG]CbbY, protein of unknown function linked to the Calvin-Benson-Bassham cycle, HAD-like hydrolase
61cbbA21639908..1640945 [+], 103893354312  [UniProt]  [KEGG]Fructose-bisphosphate aldolase (Fba)
62pykA21640960..1642378 [+], 141993354313  [UniProt]  [KEGG]pyruvate kinase
63cbbJ11642414..1643232 [+], 81993354314  [UniProt]  [KEGG]triosephosphate isomerase (CbbJ)
64cbbI11643232..1643891 [+], 66093354315  [UniProt]  [KEGG]ribose 5-phosphate isomerase (cbbI)
65hoxF1644017..1645825 [+], 180993354316  [UniProt]  [KEGG]NAD-reducing hydrogenase diaphorase moiety large subunit
66hoxU1645822..1646532 [+], 71193354317  [UniProt]  [KEGG]NAD-reducing hydrogenase diaphorase moiety small subunit
67hoxY1646529..1647158 [+], 63093354318  [UniProt]  [KEGG]NAD-reducing hydrogenase hoxS delta subunit
68hoxH1647176..1648642 [+], 146793354319  [UniProt]  [KEGG]NAD-reducing hydrogenase hoxS subunit beta
69hoxW1648626..1649132 [+], 50793354320  [UniProt]  [KEGG]((NiFe) hydrogenase C-terminal protease)
70hoxI1649145..1649648 [+], 50493354321  [UniProt]  [KEGG]cyclic nucleotide-binding domain (cNMP-BD) protein
71pntAA'1649985..1650716 [+], 732pseudogene -
72tnpA1650747..1651775 [-], 102993354323  [UniProt]  [KEGG]transposase IS1088
73pntAA'1651820..1652236 [+], 417pseudogene -
74pntAB1652237..1652542 [+], 306pseudogene -
75pntB1652539..1653912 [+], 137493354326  [UniProt]  [KEGG]NAD(P) transhydrogenase subunit beta
76hoxN1653974..1654810 [+], 83793354327  [UniProt]  [KEGG]High-affinity nickel-transporter
77Rmet_64541655015..1655209 [+], 195288227169  [UniProt] hypothetical protein
78Rmet_15341655263..1655568 [+], 306pseudogene -
79hypA21655561..1655902 [+], 34293354329  [UniProt]  [KEGG]Hydrogenase nickel incorporation protein hypA (Protein hupA)
80hypB21655936..1656916 [+], 98193354330  [UniProt]  [KEGG]GTP hydrolase involved in nickel liganding into hydrogenases
81hypF21656930..1659287 [+], 235893354331  [UniProt]  [KEGG]carbamoyl phosphate phosphatase and maturation protein for (NiFe) hydrogenases
82hypC21659340..1659528 [+], 18993354332  [UniProt]  [KEGG]Hydrogenase expression/formation protein HypC
83hypD21659525..1660667 [+], 114393354333  [UniProt]  [KEGG]protein required for maturation of hydrogenases
84hypE21660741..1661790 [+], 105093354334  [UniProt]  [KEGG]carbamoyl phosphate phosphatase, hydrogenase 3 maturation protein
85hoxX1661889..1663628 [+], 174093354335  [UniProt]  [KEGG]Hydrogenase maturation factor hoxX
86hoxA1663625..1664554 [+], 93093354336  [UniProt]  [KEGG]Hydrogenase transcriptional regulatory protein
87Rmet_64551663967..1664401 [-], 435288227170  [UniProt] hypothetical protein
88cbbA (delta)1664544..1664927 [-], 384pseudogene -
89tnpA1665103..1668018 [+], 291693354338  [UniProt]  [KEGG]transposase IS1071
90Rmet_15451668181..1668588 [-], 40893354339  [UniProt]  [KEGG]hypothetical protein
91traR1668624..1669604 [+], 98193354340  [UniProt]  [KEGG]Transcriptional regulator, LysR family (CMGI-3)
92Rmet_15471669601..1669879 [+], 27993354341  [UniProt]  [KEGG]lipoprotein precursor (transfer module of CMGI-3)
93traG1670131..1672125 [+], 199593354342  [UniProt]  [KEGG]conjugal transfer protein
94Rmet_15491672122..1672586 [+], 46593354343  [UniProt]  [KEGG]DNA-binding helix-turn-helix domain-containing protein (CopG-like) (belongs to the transfer module of genomic island CMGI-3)
95trbB1672583..1673659 [+], 107793354344  [UniProt]  [KEGG]P-type conjugative transfer ATPase TrbB (CMGI-2)
96trbC1673656..1674039 [+], 38493354345  [UniProt]  [KEGG]mating pair formation conjugal transfer TrbC transmembrane protein (module transfer of genomic island CMGI-3)
97trbD1674036..1674308 [+], 27393354346  [UniProt]  [KEGG]putative conjugal transfer transmembrane protein
98trbE1674324..1676753 [+], 243093354347  [UniProt]  [KEGG]ATPase involved in conjugal transfer CagE TrbE VirB component of type IV transporter system (belongs to transfer module of genomic island CMGI-3)
99trbJ1676750..1677475 [+], 72693354348  [UniProt]  [KEGG]mating pair formation protein
100Rmet_15551677488..1677820 [+], 33393354349  [UniProt]  [KEGG]lipoprotein
101trbL1677817..1679202 [+], 138693354350  [UniProt]  [KEGG]conjugal transfer transmembrane protein
102trbF1679215..1679919 [+], 70593354351  [UniProt]  [KEGG]conjugal transfer precursor protein
103trbG1679916..1680917 [+], 100293354352  [UniProt]  [KEGG]Conjugal transfer protein precursor
104trbI1680920..1682188 [+], 126993354353  [UniProt]  [KEGG]type IV secretion system transmembrane protein (conjugal transfer:mating pair formation )
105Rmet_15601682185..1682445 [+], 26193354354  [UniProt]  [KEGG]conserved hypothetical protein
106Rmet_15611682540..1683277 [+], 738288227171 conserved hypothetical protein
107Rmet_15621683274..1684194 [+], 92193354356 conserved hypothetical protein
108tnpA1684483..1685010 [+], 52893354357 transposase DNA binding site ISRme12
109tnpB1685010..1685846 [+], 83793354358 transposase catalytic site ISRme12
110Rmet_15651685944..1687476 [-], 153393354359 Flavin-containing monooxygenase FMO:IMP dehydrogenase/GMP reductase:FAD dependent oxidoreductase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins91Fasta
(1) Janssen PJ; Van Houdt R; Moors H; Monsieurs P; Morin N; Michaux A; Benotmane MA; Leys N; Vallaeys T; Lapidus A; Monchy S; Medigue C; Taghavi S; McCorkle S; Dunn J; van der Lelie D; Mergeay M (2010). The complete genome sequence of Cupriavidus metallidurans strain CH34, a master survivalist in harsh and anthropogenic environments. PLoS One. 5(5):e10433. [PudMed:20463976]