ICEberg
ICEberg ID339
NameICE(Tn4371)6064
FamilyTn4371
OrganismBurkholderia pseudomallei MSHR346
Size (bp)49278
GC content [Genome] (%)62.21 [67]
Insertion site-
FunctionMetabolism
Species that ICE can be transferred to-
Nucleotide SequenceCP001408 (ICE sequence without defined boundaries in this genome)
Replicon chromosome I (4098576 bp, Project:29855) [NC_012695]
Genome coordinates896551..945569
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of ICE(Tn4371)6064 form CP001408
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1GBP346_A0935893036..895237 [+], 2202237504216 conserved hypothetical protein
2GBP346_A0936895273..896229 [-], 957237503479 integrase core domain protein
3GBP346_A0937896551..897882 [+], 1332237503525  [UniProt] phage integrase family protein
4GBP346_A0938897906..898256 [+], 351237502938  [UniProt] probable addiction module killer proteinTA
5GBP346_A0939898264..898548 [+], 285237504761  [UniProt] putative transcriptional regulatorTA
6GBP346_A0940898662..899342 [+], 681237504371  [UniProt] hypothetical protein
7GBP346_A0941900049..901143 [+], 1095237505544  [UniProt] hypothetical protein
8GBP346_A0942901323..906524 [+], 5202237504888  [UniProt] conserved hypothetical protein
9GBP346_A0943906804..908363 [-], 1560237506733  [UniProt] conserved hypothetical protein
10GBP346_A0944908959..909831 [+], 873237504095  [UniProt] protein YafZVF
11GBP346_A0945909792..911954 [+], 2163237503751  [UniProt] ParB domain protein nuclease
12GBP346_A0946912106..912225 [+], 120237504498  [UniProt] conserved hypothetical protein
13GBP346_A0947912467..913282 [+], 816237505092  [UniProt] conserved hypothetical protein
14GBP346_A0948914090..914404 [+], 315237505674  [UniProt] conserved hypothetical protein
15GBP346_A0949914770..915813 [-], 1044237506230  [UniProt] conserved hypothetical protein
16GBP346_A0950916051..916344 [-], 294237506820  [UniProt] helix-turn-helix domain protein
17GBP346_A0951916567..916914 [+], 348237503438  [UniProt] conserved hypothetical protein
18GBP346_A0952916983..917126 [-], 144237503957  [UniProt] hypothetical protein
19GBP346_A0953917256..918005 [+], 750237505103  [UniProt] conserved hypothetical protein
20GBP346_A0954918089..918379 [+], 291237503008  [UniProt] conserved hypothetical protein
21GBP346_A0955918406..919263 [+], 858237505960  [UniProt] replication protein A
22GBP346_A0956919517..920155 [+], 639237505502  [UniProt] cobyrinic acid ac-diamide synthase
23GBP346_A0957920143..920415 [+], 273237505357  [UniProt] conserved hypothetical protein
24GBP346_A0958920412..920945 [+], 534237504890  [UniProt] conserved hypothetical protein
25GBP346_A0959920942..921529 [+], 588237504698  [UniProt] traf peptidase, serine peptidase, merops family s26c
26GBP346_A0960921965..923926 [+], 1962237504231  [UniProt] conserved hypothetical protein
27GBP346_A0961925072..926466 [+], 1395237506507  [UniProt] Rieske (2Fe-2S) domain protein
28GBP346_A0962926463..926939 [+], 477237506069  [UniProt] anthranilate dioxygenase small subunit
29GBP346_A0963928663..929502 [+], 840237505351  [UniProt] hydroxyquinol 1,2-dioxygenase (1,2-HQD)
30GBP346_A0964929707..930783 [+], 1077237502871  [UniProt] maleylacetate reductase
31GBP346_A0965931006..931860 [+], 855237505448  [UniProt] 4-hydroxybenzoate transporter
32GBP346_A0966932160..932309 [+], 150237505914  [UniProt] hypothetical protein
33GBP346_A0967932425..933393 [+], 969237503618  [UniProt] transcriptional regulator, LysR family
34GBP346_A0968933772..935775 [+], 2004237503829  [UniProt] conjugal transfer protein TraG
35GBP346_A0969935772..936236 [+], 465237506482  [UniProt] CopG domain protein DNA-binding domain protein
36trbB936233..937261 [+], 1029237502889  [UniProt] P-type conjugative transfer ATPase TrbB
37GBP346_A0971937258..937632 [+], 375237506135  [UniProt] conjugal transfer protein TrbC
38GBP346_A0972937629..937898 [+], 270237506746  [UniProt] conjugal transfer protein
39GBP346_A0973937909..940371 [+], 2463237505181  [UniProt] ATPase
40trbJ940368..941132 [+], 765237504905  [UniProt] P-type conjugative transfer protein TrbJ
41trbL941181..942329 [+], 1149237504097  [UniProt] P-type conjugative transfer protein TrbL
42GBP346_A0976942342..943046 [+], 705237506212  [UniProt] conjugal transfer protein
43trbG943043..944047 [+], 1005237503668  [UniProt] P-type conjugative transfer protein TrbG
44GBP346_A0978944050..945330 [+], 1281237504805  [UniProt] conjugation TrbI family protein
45GBP346_A0979945327..945569 [+], 243237506424  [UniProt] conserved domain protein
46GBP346_A0980946517..946909 [-], 393237503893 ISPsy5, transposase
47GBP346_A0981947965..948105 [+], 141237505500 hypothetical protein
48GBP346_A0982948470..949219 [+], 750237504570 3-oxoadipate CoA-transferase, A subunit
49GBP346_A0983949216..949884 [+], 669237504554 3-oxoadipate CoA-transferase subunit B (Beta-ketoadipate:succinyl-CoA transferase subunit B)
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins43Fasta
(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 9:242. [PudMed:19941653] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature