ICEberg
ICEberg ID340
NameICE(Tn4371)6065
FamilyTn4371
OrganismPolaromonas naphthalenivorans CJ2
Size (bp)70106
GC content [Genome] (%)62.89 [57]
Insertion site-
FunctionBiphenyl degradation
Species that ICE can be transferred to-
Nucleotide SequenceCP000530 (ICE sequence without defined boundaries in this genome)
Replicon plasmid pPNAP01 (353291 bp, Project:13418) [NC_008757]
Genome coordinates12802..81711
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of ICE(Tn4371)6065 form CP000530
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1Pnap_41308115..8825 [+], 711120595981 hypothetical protein
2Pnap_41339783..10319 [-], 537120595982 hypothetical protein
3Pnap_413410764..11669 [+], 906120595983 hypothetical protein
4Pnap_413511757..12239 [+], 483120595984 hypothetical protein
5Pnap_413612451..12690 [+], 240120595985 hypothetical protein
6Pnap_413712802..14004 [+], 1203120595986  [UniProt]  [KEGG]phage integrase family protein
7Pnap_413814028..14369 [+], 342120595987  [UniProt]  [KEGG]protein of unknown function DUF891TA
8Pnap_413914356..14679 [+], 324120595988  [UniProt]  [KEGG]putative transcriptional regulatorTA
9Pnap_414015183..15839 [-], 657120595989  [UniProt]  [KEGG]OmpW family protein
10Pnap_414115986..16846 [-], 861120595990  [UniProt]  [KEGG]alpha/beta hydrolase fold
11Pnap_414216917..17957 [-], 1041120595991  [UniProt]  [KEGG]pyruvate carboxyltransferase
12Pnap_414317975..18889 [-], 915120595992  [UniProt]  [KEGG]Semialdehyde dehydrogenase, NAD - binding
13Pnap_414418910..19692 [-], 783120595993  [UniProt]  [KEGG]4-oxalocrotonate decarboxylase
14Pnap_414519780..20391 [-], 612120595994  [UniProt]  [KEGG]Glutathione S-transferase, C-terminal domain
15Pnap_414620423..21301 [-], 879120595995  [UniProt]  [KEGG]Glyoxalase/bleomycin resistance protein/dioxygenase
16Pnap_414721312..22142 [-], 831120595996  [UniProt]  [KEGG]short-chain dehydrogenase/reductase SDR
17Pnap_414822185..23411 [-], 1227120595997  [UniProt]  [KEGG]FAD-dependent pyridine nucleotide-disulphide oxidoreductase
18Pnap_414923408..23737 [-], 330120595998  [UniProt]  [KEGG]Rieske (2Fe-2S) domain protein
19Pnap_415023849..24256 [-], 408120595999  [UniProt]  [KEGG]conserved hypothetical membrane protein, biphenyl pathway
20Pnap_415124295..24861 [-], 567120596000  [UniProt]  [KEGG]Benzene 1,2-dioxygenase
21Pnap_415224982..26352 [-], 1371120596001  [UniProt]  [KEGG]ring hydroxylating dioxygenase, alpha subunit
22Pnap_415326444..27178 [-], 735120596002  [UniProt]  [KEGG]transcriptional regulator, GntR family
23Pnap_415427260..27766 [-], 507120596003  [UniProt]  [KEGG]conserved hypothetical protein
24Pnap_415527988..28539 [-], 552120596004  [UniProt]  [KEGG]hypothetical protein
25Pnap_415628650..29477 [+], 828120596005  [UniProt]  [KEGG]protein of unknown function DUF932VF
26Pnap_415730595..31101 [+], 507120596006  [UniProt]  [KEGG]DNA repair protein RadCVF
27Pnap_415931719..33758 [+], 2040120596007  [UniProt]  [KEGG]ParB domain protein nuclease
28Pnap_416134523..34831 [+], 309120596008  [UniProt]  [KEGG]protein of unknown function DUF736
29Pnap_416234878..35174 [-], 297120596009  [UniProt]  [KEGG]transcriptional regulator, XRE family
30Pnap_416335617..35967 [+], 351120596010  [UniProt]  [KEGG]putative lipoprotein
31Pnap_416436329..37126 [+], 798120596011  [UniProt]  [KEGG]conserved hypothetical protein
32Pnap_416537211..37513 [+], 303120596012  [UniProt]  [KEGG]conserved hypothetical protein
33Pnap_416637549..38400 [+], 852120596013  [UniProt]  [KEGG]conserved hypothetical replication initiator and transcription repressor protein
34Pnap_416738651..39289 [+], 639120596014  [UniProt]  [KEGG]Cobyrinic acid a,c-diamide synthase
35Pnap_416839286..39528 [+], 243120596015  [UniProt]  [KEGG]conserved hypothetical protein
36Pnap_416939525..40070 [+], 546120596016  [UniProt]  [KEGG]conserved hypothetical protein
37Pnap_417040067..40618 [+], 552120596017  [UniProt]  [KEGG]putative conjugal transfer TRAF transmembrane protein
38Pnap_417141133..43094 [+], 1962120596018  [UniProt]  [KEGG]conserved hypothetical protein
39Pnap_417243455..44072 [+], 618120596019  [UniProt]  [KEGG]transcriptional regulator, TetR family
40Pnap_417344142..44729 [+], 588120596020  [UniProt]  [KEGG]Late embryogenesis abundant protein
41Pnap_417444817..45263 [+], 447120596021  [UniProt]  [KEGG]conserved hypothetical protein
42Pnap_417545476..46177 [+], 702120596022  [UniProt]  [KEGG]conserved hypothetical protein
43Pnap_417646177..47925 [+], 1749120596023  [UniProt]  [KEGG]2-octaprenylphenol hydroxylase
44Pnap_417747922..50582 [+], 2661120596024  [UniProt]  [KEGG]Glycosyltransferase 28, C-terminal domain
45Pnap_417850579..51550 [+], 972120596025  [UniProt]  [KEGG]Patatin
46Pnap_417951543..52352 [+], 810120596026  [UniProt]  [KEGG]conserved hypothetical protein
47Pnap_418052349..53449 [+], 1101120596027  [UniProt]  [KEGG]efflux transporter, RND family, MFP subunit
48Pnap_418153446..56727 [+], 3282120596028  [UniProt]  [KEGG]acriflavin resistance protein
49Pnap_418256724..58019 [+], 1296120596029  [UniProt]  [KEGG]outer membrane efflux protein
50Pnap_418458305..59330 [-], 1026120596030  [UniProt]  [KEGG]transcriptional regulator, AraC family
51Pnap_418559556..61814 [+], 2259120596031  [UniProt]  [KEGG]oxidoreductase FAD/NAD(P)-binding domain protein
52Pnap_418661877..63517 [+], 1641120596032  [UniProt]  [KEGG]glucose-methanol-choline oxidoreductase
53Pnap_418763521..65158 [+], 1638120596033  [UniProt]  [KEGG]AMP-dependent synthetase and ligase
54Pnap_418865158..66897 [+], 1740120596034  [UniProt]  [KEGG]aldehyde dehydrogenase
55Pnap_418966988..67698 [+], 711120596035  [UniProt]  [KEGG]OmpW family protein
56Pnap_419168268..69179 [+], 912120596036  [UniProt]  [KEGG]transcriptional regulator, LysR family
57Pnap_419269191..69433 [+], 243120596037  [UniProt]  [KEGG]conserved hypothetical protein
58Pnap_419369719..71710 [+], 1992120596038  [UniProt]  [KEGG]TRAG family protein
59Pnap_419471707..72159 [+], 453120596039  [UniProt]  [KEGG]CopG domain protein DNA-binding domain protein
60Pnap_419572156..73187 [+], 1032120596040  [UniProt]  [KEGG]type II secretion system protein E
61Pnap_419673184..73543 [+], 360120596041  [UniProt]  [KEGG]Conjugal transfer protein TrbC
62Pnap_419773540..73824 [+], 285120596042  [UniProt]  [KEGG]putative conjugal transfer TrbD transmembrane protein
63Pnap_419873846..76287 [+], 2442120596043  [UniProt]  [KEGG]AAA ATPase
64Pnap_419976284..77012 [+], 729120596044  [UniProt]  [KEGG]putative conjugal transfer TrbJ signal peptide protein
65Pnap_420077023..78396 [+], 1374120596045  [UniProt]  [KEGG]TrbL/VirB6 plasmid conjugal transfer protein
66Pnap_420178409..79113 [+], 705120596046  [UniProt]  [KEGG]Conjugal transfer protein
67Pnap_420279110..80123 [+], 1014120596047  [UniProt]  [KEGG]Conjugal transfer protein TrbG/VirB9/CagX
68Pnap_420380126..81445 [+], 1320120596048  [UniProt]  [KEGG]conjugation TrbI family protein
69Pnap_420481442..81711 [+], 270120596049  [UniProt]  [KEGG]Uncharacterized conserved small protein-like protein
70Pnap_420582262..82612 [-], 351120596050 protein of unknown function DUF805
71Pnap_420682654..83067 [-], 414120596051 hypothetical protein
72Pnap_420783134..83589 [-], 456120596052 hypothetical protein
73Pnap_420883904..84173 [-], 270120596053 hypothetical protein
74Pnap_420985400..85678 [+], 279120596054 hypothetical protein
75Pnap_421085689..85958 [+], 270120596055 conserved hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins64Fasta
(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 9:242. [PudMed:19941653] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature