ICEberg
ICEberg ID341
NameICEAdeBC-1
FamilyTn4371
OrganismAlicycliphilus denitrificans BC
Size (bp)~46 K
GC content [Genome] (%)64 [68]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP002449 (ICE sequence without defined boundaries in this genome)
Replicon[NC_014910]
Genome coordinates233693..280043
Link to view genome context of this ICE in the genome browser
in_silico This is a putative ICE identified in this study by Blast.
Complete gene list of ICEAdeBC-1 form CP002449
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1Alide_0206231466..232395 [+], 930317115502 CRISPR-associated protein Cas1
2Alide_0207232438..232743 [+], 306317115503 CRISPR-associated protein Cas2
3Alide_0209233693..234955 [-], 1263317115504  [UniProt]  [KEGG]conjugation TrbI family protein
4Alide_0210234957..235937 [-], 981317115505  [UniProt]  [KEGG]P-type conjugative transfer protein TrbG
5Alide_0211235934..236638 [-], 705317115506  [UniProt]  [KEGG]conjugal transfer protein TrbF
6Alide_0212236657..237991 [-], 1335317115507  [UniProt]  [KEGG]P-type conjugative transfer protein TrbL
7Alide_0213238004..238729 [-], 726317115508  [UniProt]  [KEGG]P-type conjugative transfer protein TrbJ
8Alide_0214238726..241161 [-], 2436317115509  [UniProt]  [KEGG]CagE, TrbE, VirB component of type IV transporter system, conserved region protein
9Alide_0215241171..241443 [-], 273317115510  [UniProt]  [KEGG]putative conjugal transfer TrbD transmembrane protein
10Alide_0216241440..241817 [-], 378317115511  [UniProt]  [KEGG]Conjugal transfer protein TrbC
11Alide_0217241814..242848 [-], 1035317115512  [UniProt]  [KEGG]P-type conjugative transfer ATPase TrbB
12Alide_0218242845..243291 [-], 447317115513  [UniProt]  [KEGG]CopG/DNA-binding domain-containing protein
13Alide_0219243288..245291 [-], 2004317115514  [UniProt]  [KEGG]TRAG family protein
14Alide_0220245507..245779 [-], 273317115515  [UniProt]  [KEGG]putative lipoprotein
15Alide_0221245815..246708 [-], 894317115516  [UniProt]  [KEGG]LysR substrate-binding protein
16Alide_0222246778..249966 [-], 3189317115517  [UniProt]  [KEGG]heavy metal efflux pump, CzcA family
17Alide_0223249983..251575 [-], 1593317115518  [UniProt]  [KEGG]efflux transporter, RND family, MFP subunit
18Alide_0224251578..252903 [-], 1326317115519  [UniProt]  [KEGG]outer membrane efflux protein
19Alide_0225253070..253423 [-], 354317115520  [UniProt]  [KEGG]hypothetical protein
20Alide_0226253630..253965 [-], 336317115521  [UniProt]  [KEGG]hypothetical protein
21Alide_0227254110..254796 [+], 687317115522  [UniProt]  [KEGG]heavy metal response regulatorVF
22Alide_0228254925..256115 [+], 1191317115523  [UniProt]  [KEGG]heavy metal sensor kinase
23Alide_0229256151..256843 [-], 693317115524  [UniProt]  [KEGG]transporter
24Alide_0230256847..257137 [-], 291317115525  [UniProt]  [KEGG]hypothetical protein
25Alide_0231257160..259469 [-], 2310317115526  [UniProt]  [KEGG]heavy metal translocating P-type ATPase
26Alide_0232259708..260163 [+], 456317115527  [UniProt]  [KEGG]Cd(II)/Pb(II)-responsive transcriptional regulator
27Alide_0233260164..262146 [-], 1983317115528  [UniProt]  [KEGG]hypothetical protein
28Alide_0234262143..262598 [-], 456317115529  [UniProt]  [KEGG]hypothetical protein
29Alide_0235262595..263194 [-], 600317115530  [UniProt]  [KEGG]Peptidase S26, conserved region protein
30Alide_0236263191..263736 [-], 546317115531  [UniProt]  [KEGG]hypothetical protein
31Alide_0237263733..264017 [-], 285317115532  [UniProt]  [KEGG]hypothetical protein
32Alide_0238264014..264652 [-], 639317115533  [UniProt]  [KEGG]cobyrinic acid ac-diamide synthase
33Alide_0239264906..265739 [-], 834317115534  [UniProt]  [KEGG]Replication initiator protein A
34Alide_0240265766..266047 [-], 282317115535  [UniProt]  [KEGG]hypothetical protein
35Alide_0241266131..266904 [-], 774317115536  [UniProt]  [KEGG]hypothetical protein
36Alide_0242267233..267583 [-], 351317115537  [UniProt]  [KEGG]putative lipoprotein
37Alide_0243267842..268135 [+], 294317115538  [UniProt]  [KEGG]helix-turn-helix domain protein
38Alide_0244268520..268834 [-], 315317115539  [UniProt]  [KEGG]protein of unknown function DUF736
39Alide_0245269905..270819 [+], 915317115540  [UniProt]  [KEGG]putative phage associated protein
40Alide_0246270960..271802 [+], 843317115541  [UniProt]  [KEGG]RelA/SpoT domain protein
41Alide_0247271936..272145 [-], 210317115542  [UniProt]  [KEGG]hypothetical protein
42Alide_0248272208..274262 [-], 2055317115543  [UniProt]  [KEGG]ParB domain protein nuclease
43Alide_0249274328..275155 [-], 828317115544  [UniProt]  [KEGG]hypothetical proteinVF
44Alide_0250276176..276409 [+], 234317115545  [UniProt]  [KEGG]hypothetical protein
45Alide_0251276459..276767 [+], 309317115546  [UniProt]  [KEGG]helix-turn-helix domain protein
46Alide_0252276730..277758 [+], 1029317115547  [UniProt]  [KEGG]retron reverse transcriptase
47Alide_0253277930..278247 [-], 318317115548  [UniProt]  [KEGG]putative transcriptional regulatorTA
48Alide_0254278244..278573 [-], 330317115549  [UniProt]  [KEGG]addiction module killer proteinTA
49Alide_0255278679..280043 [-], 1365317115550  [UniProt]  [KEGG]integrase family protein
50Alide_0256284052..284594 [-], 543317115551 Shikimate kinase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins47Fasta
Identified as part of this study from CP002449