ICEberg
ICEberg ID35
NameICEVchVie1
FamilySXT/R391
OrganismVibrio cholerae V21
Size (bp)-
GC content [Genome] (%)-
Insertion siteprfC
FunctionAminoglycosides resistance
Species that ICE can be transferred to-
Nucleotide SequenceAB114188 (partical ICE sequence)
experimental This is a ICE derived from experimental literature.
Incomplete gene list of ICEVchVie1 from AB114188
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1int1..1242 [-], 124232469307  [UniProt] integrase
2s0021244..1513 [-], 27032469308  [UniProt] hypothetical protein
3s0031516..2490 [-], 97532469309  [UniProt] hypothetical protein
4rumB3409..4581 [-], 117332469310  [UniProt] UV repair DNA polymerase
5tnp4878..5471 [+], 59432469311  [UniProt] putative transposase
6tnpA5585..8485 [+], 290132469312  [UniProt] putative transposase
7tnpB8980..10473 [+], 149432469313  [UniProt] putative transposase
8s01310504..11388 [+], 88532469314  [UniProt] hypothetical proteinAR
9floR11605..12819 [+], 121532469315  [UniProt] florfenicol exporterAR
10s01512847..13152 [+], 30632469316  [UniProt] hypothetical protein
11tnpB13264..13803 [+], 54032469317  [UniProt] putative transposase
12strB13775..14608 [-], 83432469318  [UniProt] streptomycin phosphotransferaseAR
13merR14663..14956 [-], 29432469319  [UniProt] MerR
14tetR15121..15771 [-], 65132469320  [UniProt] tetracycline resistance repressor proteinVF
15tetA15877..17076 [+], 120032469321  [UniProt] tetracycline resistance protein AAR VF
16ORFB17108..17625 [-], 51832469322  [UniProt] hypothetical protein
17tnpB17625..17759 [+], 13532469323  [UniProt] putative transposase
18strB17731..18567 [-], 83732469324  [UniProt] streptomycin phosphotransferaseAR
19strA18567..19370 [-], 80432469325  [UniProt] streptomycin phosphotransferaseAR
20sulII19431..20246 [-], 81632469326  [UniProt] dihydropteroate synthase type IIAR
21tnpA20717..22330 [+], 161432469327  [UniProt] putative transferase
22s02121798..22520 [-], 72332469328  [UniProt] hypothetical protein
23rumB22673..22993 [-], 32132469329  [UniProt] UV repair DNA polymerase
24rumA22950..23399 [-], 45032469330  [UniProt] UV repair
 
integrase Gene may contribute to site-specific recombination

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins24Fasta
(1) Ceccarelli D; Daccord A; Rene M; Burrus V (2008). Identification of the origin of transfer (oriT) and a new gene required for mobilization of the SXT/R391 family of integrating conjugative elements. J Bacteriol. 190(15):5328-38. [PudMed:18539733] experimental
 
experimental experimental literature