ICEberg
ICEberg ID350
NameICEHpaT3T1
FamilyICEHin1056
OrganismHaemophilus parainfluenzae T3T1
Size (bp)60056
GC content [Genome] (%)37.8 [39.6]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceFQ312002 (complete ICE sequence in this genome)
Replicon[FQ312002]
Genome coordinates1153089..1213144
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of ICEHpaT3T1 form FQ312002
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1PARA_114401148671..1149465 [-], 795301155782 hydoxyethylthiazole kinase
2PARA_114501149481..1150128 [-], 648301155783 -
3PARA_114601150138..1151082 [-], 945301155784 -
4PARA_114701151108..1151845 [-], 738301155785 -
5PARA_114801151842..1152567 [-], 726301155786 -
6PARA_114901153323..1154165 [-], 843301155787  [UniProt] putative site-specific recombinase
7PARA_115001154227..1156119 [-], 1893301155788  [UniProt] -
8PARA_115101156356..1157060 [+], 705301155789  [UniProt] putative uncharacterized protein
9PARA_115201157375..1158073 [-], 699301155790  [UniProt] putative dna-binding protein
10PARA_115301158352..1158588 [+], 237301155791  [UniProt] -
11PARA_115501159230..1159496 [-], 267301155792  [UniProt] predicted toxin of the YafQ-DinJ toxin-antitoxin system
12PARA_115601159480..1159824 [-], 345301155793  [UniProt] -
13PARA_115701160468..1161058 [+], 591301155794  [UniProt] e14 prophage; site-specific DNA recombinase
14Tn10L1161320..1162528 [+], 1209301155795  [UniProt] tn10 transposase for is10 leftVF
15PARA_115901162538..1162663 [-], 126301155796  [UniProt] putative transcriptional regulator
16gltS1162894..1164099 [-], 1206301155797  [UniProt] putative glutamate permease
17ybeB1164543..1164863 [+], 321301155798  [UniProt] putative monooxygenase
18ybeA1164745..1165242 [+], 498301155799  [UniProt] ybea proteinVF
19ybdA1165250..1165936 [+], 687301155800  [UniProt] putative transcriptional regulatorVF
20tetR1165914..1166540 [-], 627301155801  [UniProt] tetr (tetracycline repressor protein)VF
21tetA1166685..1167824 [+], 1140301155802  [UniProt] tetracycline antiporter protein (tetracycline resistance protein)AR VF
22tetC1167937..1168605 [-], 669301155803  [UniProt] tetracycline transcriptional regulatorVF
23tetD1168618..1169034 [+], 417301155804  [UniProt] tetd (tetracycline resistance protein d)VF
24R00851169044..1170252 [-], 1209301155805  [UniProt] is10 transposaseVF
25PARA_116901170816..1171577 [-], 762301155806  [UniProt] -
26PARA_117001171681..1172634 [-], 954301155807  [UniProt] -
27PARA_117101172765..1172923 [-], 159301155808  [UniProt] -
28PARA_117201172927..1173175 [-], 249301155809  [UniProt] -
29PARA_117301173178..1173411 [-], 234301155810  [UniProt] -
30PARA_117401173496..1173915 [-], 420301155811  [UniProt] -
31PARA_117501174227..1174670 [+], 444301155812  [UniProt] -
32PARA_117601174667..1175608 [+], 942301155813  [UniProt] -
33PARA_117701175623..1177623 [+], 2001301155814  [UniProt] -
34PARA_117801177635..1178042 [+], 408301155815  [UniProt] -
35PARA_117901178087..1178266 [-], 180301155816  [UniProt] -
36PARA_118001178464..1178820 [+], 357301155817  [UniProt] -
37PARA_118101178846..1180342 [-], 1497301155818  [UniProt] -
38PARA_118201180351..1180674 [-], 324301155819  [UniProt] -
39PARA_118301180684..1181091 [-], 408301155820  [UniProt] -
40PARA_118401181099..1183969 [-], 2871301155821  [UniProt] -
41PARA_118501183985..1184392 [-], 408301155822  [UniProt] -
42PARA_118601184402..1185802 [-], 1401301155823  [UniProt] putative exported protein precursor
43PARA_118701185813..1186682 [-], 870301155824  [UniProt] -
44PARA_118801186682..1187326 [-], 645301155825  [UniProt] -
45PARA_118901187338..1187709 [-], 372301155826  [UniProt] conserved putative membrane protein
46PARA_119001187729..1188130 [-], 402301155827  [UniProt] conserved putative membrane protein
47PARA_119101188150..1188395 [-], 246301155828  [UniProt] -
48PARA_119201188399..1188749 [-], 351301155829  [UniProt] conserved putative exported protein
49PARA_119301188880..1189566 [-], 687301155830  [UniProt] conserved putative membrane protein
50PARA_119401189566..1189892 [-], 327301155831  [UniProt] putative uncharacterized protein
51PARA_119501189885..1192134 [-], 2250301155832  [UniProt] putative uncharacterized protein
52PARA_119601192131..1192637 [-], 507301155833  [UniProt] conserved putative exported protein
53PARA_119701192653..1193411 [-], 759301155834  [UniProt] -
54PARA_119801193390..1194130 [-], 741301155835  [UniProt] putative exported protein precursor
55pilL1194135..1194761 [-], 627301155836  [UniProt] putative lipoprotein precursor
56PARA_120001194860..1195624 [-], 765301155837  [UniProt] -
57PARA_120101195682..1196278 [-], 597301155838  [UniProt] -
58PARA_120201196371..1196841 [-], 471301155839  [UniProt] -VF
59PARA_120301196981..1197622 [-], 642301155840  [UniProt] -
60PARA_120401197730..1198164 [-], 435301155841  [UniProt] -
61PARA_120701199012..1199458 [-], 447301155842  [UniProt] -
62PARA_120801199451..1200581 [-], 1131301155843  [UniProt] -
63PARA_120901200649..1202694 [-], 2046301155844  [UniProt] dna topoisomerase iii (ec 5.99.1.2)
64PARA_121001202968..1203156 [-], 189301155845  [UniProt] possible filamentous phage ctx rstr-like repressor
65PARA_121101203281..1203961 [+], 681301155846  [UniProt] -
66PARA_121201204513..1205031 [-], 519301155847  [UniProt] -
67PARA_121301205058..1205480 [-], 423301155848  [UniProt] -VF
68PARA_121401205726..1206199 [-], 474301155849  [UniProt] -
69PARA_121501206214..1206969 [-], 756301155850  [UniProt] -
70PARA_121601207194..1208417 [-], 1224301155851  [UniProt] -
71PARA_121701208567..1209118 [-], 552301155852  [UniProt] -
72PARA_121801209118..1210818 [-], 1701301155853  [UniProt] -
73PARA_121901210811..1212166 [-], 1356301155854  [UniProt] replicative dna helicase (ec 3.6.1.-)
74PARA_122001212168..1213004 [-], 837301155855  [UniProt] predicted atpase involved in chromosome partitioning
75PARA_122101213176..1213373 [-], 198301155856 -
76PARA_122201213607..1214716 [+], 1110301155857 cystathionine gamma-synthase, PLP-dependent
77PARA_122301214834..1215157 [+], 324301155858 thioredoxin 1
78PARA_122401215211..1216020 [-], 810301155859 -
79PARA_122501216221..1216805 [+], 585301155860 D-sedoheptulose 7-phosphate isomerase
80PARA_122601216955..1217692 [+], 738301155861 arginine transporter subunit
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins69Fasta
(1) Juhas M; Power PM; Harding RM; Ferguson DJ; Dimopoulou ID; Elamin AR; Mohd-Zain Z; Hood DW; Adegbola R; Erwin A; Smith A; Munson RS; Harrison A; Mansfield L; Bentley S; Crook DW (2007). Sequence and functional analyses of Haemophilus spp. genomic islands. Genome Biol. 8(11):R237. [PudMed:17996041] in_silico
 
in_silico in silico analysis literature